Upgrade interactions with slurm

[Ulthran]

• I have run pytest .tests/ on a local deployment and the tests passed successfully
• If this adds a new output file, I have added a check to .tests/targets.txt
• If this fixes a bug, I have added or modified an appropriate test
• If this adds or modifies a rule that uses FASTQ files, the input accepts gzipped FASTQ and outputs gzipped FASTQ, or marks uncompressed FASTQ output as temp

If this is for a release:

• I have updated documentation
• I have updated all conda pin files (snakedeploy pin-conda-envs workflow/envs/*.yml)
• I have updated the hardcoded version at the top of install.sh to match what this release's version will be
• I have created a release archive that will be attached to this release (bash dev_scripts/generate_archive.sh)

[Ulthran]

snakemake/snakemake#2627

Potential fix for this included in snakemake 8.4.3, once it's on bioconda we can try it out

[Ulthran]

This is overridden by #454