Tests #262
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| name: Tests | |
| on: | |
| workflow_call: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 * * *' | |
| jobs: | |
| unit_tests: | |
| name: Unit Tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install Dependencies | |
| run: pip install .[test] setuptools | |
| - name: Run tests | |
| env: | |
| SUNBEAM_VER: "999" | |
| run: pytest ./tests/unit/ | |
| lint: | |
| name: Lint Codebase | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install Dependencies | |
| run: pip install black snakefmt | |
| - name: Lint Code Base | |
| run: | | |
| black --check workflow/scripts/ src/sunbeamlib/ tests/ | |
| snakefmt --check workflow/rules/ workflow/Snakefile | |
| e2e_tests: | |
| name: E2E Tests | |
| runs-on: ubuntu-latest | |
| needs: | |
| - unit_tests | |
| - lint | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: s-weigand/[email protected] | |
| - name: Install Sunbeam | |
| shell: bash | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| bash install.sh -e sunbeam -v | |
| - name: Run tests | |
| run: | | |
| source activate sunbeam | |
| pytest ./tests/e2e/ |