genomeverse

{genomeverse} is a collection of R packages that are designed to work together seamlessly to create reproducible clinico-genomic analysis pipelines.

Installation

You can install the development version of genomeverse from GitHub with:

# install.packages("devtools")
devtools::install_github("MSKCC-Epi-Bio/genomeverse")

Usage

library(genomeverse) will load the core genomeverse packages:

• cbioportalR, for pulling data from cBioPortal.
• oncokbR, for oncoKB annotation of data.
• gnomeR, for processing raw mutation, CNA and fusion files.

You also get a condensed summary of conflicts with other packages you have loaded:

library(genomeverse)
#> ── Attaching packages ──────────────────────────────── genomeverse 0.0.0.9001 ──
#> ✔ cbioportalR 1.1.0          ✔ oncokbR     0.0.0.9001
#> ✔ gnomeR      1.2.0.9004

Code of Conduct

Please note that the tidyverse project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.