Repository codes for simple genomics analysis including plot sequence length, plot %GC, and plot genome diagram using biopython module inside python. Consisting codes in python alongside genbank file materials. Below are the structure inside this repository:
- orf_and_genome_diagram.py (Identify open reading frames and genome diagram from genbank files input)
- seq_gc_to_plot.py (Plot sequence length and %GC of genbank files input)
- materials folder, consisting of collection of genbank files from NCBI mainly Alphacoronavirus complete genome from various hosts.
- sequence.gb (transmissible gastroenteritis complete genome genbank file)
This repository derived from final project of genomics courses back in 2019. Created by S. Bernard and M. Aldino