Apricot and peach RNASeq on winter dormancy transition

This repository includes the scripts generating data and figures for the manuscript.
data

• input data used in analyses and plotting figures

analysis

• The pipeline used to analyze raw Illumina reads: pipeline
• The Differential expression analysis R scripts: DEanalysis
• The co-expression analysis R scripts: network_analysis
• Other analyses:
  • PERMANOVA on the effect of rRNA content: Peach_rRNA_vegan.R