Merge pull request #857 from stan-dev/single-length-init

Fix handling of single-length inits for containers

R/args.R

@@ -896,6 +896,13 @@ process_init_list <- function(init, num_procs, model_variables = NULL) {
       if (!all(is_parameter_value_supplied)) {
         missing_parameter_values[[i]] <- parameter_names[!is_parameter_value_supplied]
       }
+      for (par_name in parameter_names[is_parameter_value_supplied]) {
+        # Make sure that initial values for single-element containers don't get
+        # unboxed when writing to JSON
+        if (model_variables$parameters[[par_name]]$dimensions == 1 && length(init[[i]][[par_name]]) == 1) {
+          init[[i]][[par_name]] <- array(init[[i]][[par_name]], dim = 1)
+        }
+      }
     }
     if (length(missing_parameter_values) > 0) {
       warning_message <- c(

tests/testthat/test-model-init.R

@@ -270,3 +270,25 @@ test_that("print message if not all parameters are initialized", {
     fixed = TRUE
   )
 })
+
+test_that("Initial values for single-element containers treated correctly", {
+  modcode <- "
+  data {
+    real y_mean;
+  }
+  parameters {
+    vector[1] y;
+  }
+  model {
+    y_mean ~ normal(y[1], 1);
+  }
+  "
+  mod <- cmdstan_model(write_stan_file(modcode), force_recompile = TRUE)
+  expect_no_error(
+    fit <- mod$sample(
+      data = list(y_mean = 0),
+      init = list(list(y = c(0))),
+      chains = 1
+    )
+  )
+})