Describe how to efficiently save model fit objects #225
Workflow file for this run
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| --- | |
| # Github Actions workflow to check CmdStanR | |
| # yamllint disable rule:line-length | |
| name: Unit tests - WSL Backend | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| WSL-R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: windows-latest | |
| name: windows-latest-WSLv1 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/[email protected] | |
| with: | |
| r-version: 'release' | |
| rtools-version: '42' | |
| - uses: r-lib/actions/[email protected] | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_local(path = ".", INSTALL_opts = "--no-test-load") | |
| install.packages("curl") | |
| shell: Rscript {0} | |
| - uses: Vampire/setup-wsl@v2 | |
| with: | |
| distribution: Ubuntu-22.04 | |
| use-cache: 'false' | |
| set-as-default: 'true' | |
| - name: Install WSL Dependencies | |
| run: | | |
| # Bugfix for current gzip (for unpacking apt packages) under WSLv1: | |
| # https://github.com/microsoft/WSL/issues/8219#issuecomment-1110508016 | |
| echo -en '\x10' | sudo dd of=/usr/bin/gzip count=1 bs=1 conv=notrunc seek=$((0x189)) | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential libopenmpi-dev | |
| shell: wsl-bash {0} | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2, wsl = TRUE, overwrite = TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wsl-backend-results | |
| path: check |