Fix compute_scale when fiducial coordinates are outside bounding box #1208
Workflow file for this run
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| name: Build standalone | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'v*' | |
| tags: | |
| - 'v*' | |
| workflow_dispatch: | |
| pull_request: | |
| defaults: | |
| run: | |
| shell: bash {0} | |
| jobs: | |
| build_binary_not_osx: | |
| runs-on: ${{ matrix.os }}-latest | |
| if: (github.repository == 'spacetelescope/jdaviz' && (github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'Build standalone'))) | |
| strategy: | |
| matrix: | |
| os: [ubuntu, windows] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install jdaviz | |
| run: pip install .[test] | |
| - name: Install pyinstaller | |
| run: pip install "pyinstaller<6" | |
| - name: Create standalone binary | |
| env: | |
| DEVELOPER_ID_APPLICATION: ${{ secrets.DEVELOPER_ID_APPLICATION }} | |
| run: (cd standalone; pyinstaller ./jdaviz.spec) | |
| - name: Run jdaviz cmd in background | |
| run: ./standalone/dist/jdaviz/jdaviz-cli imviz& | |
| - name: Install playwright | |
| run: (pip install playwright; playwright install chromium) | |
| - name: Install pytest | |
| run: pip install pytest-playwright | |
| - name: Wait for Voila to get online | |
| uses: ifaxity/wait-on-action@a7d13170ec542bdca4ef8ac4b15e9c6aa00a6866 # v1.2.1 | |
| with: | |
| resource: tcp:8866 | |
| timeout: 60000 | |
| - name: Test standalone | |
| run: (cd standalone; touch pytest.ini; JUPYTER_PLATFORM_DIRS=1 pytest test_standalone.py --video=on) | |
| - name: Upload Test artifacts | |
| if: github.event_name != 'pull_request' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-results-${{ matrix.os }} | |
| path: standalone/test-results | |
| - name: Upload jdaviz standalone (non-OSX) | |
| if: github.event_name != 'pull_request' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: jdaviz-standlone-${{ matrix.os }} | |
| path: | | |
| standalone/dist/jdaviz | |
| # Do not want to deal with OSX certs in pull request builds. | |
| build_binary_osx: | |
| runs-on: ${{ matrix.os }}-latest | |
| if: (github.repository == 'spacetelescope/jdaviz' && (github.event_name == 'push' || github.event_name == 'workflow_dispatch')) | |
| strategy: | |
| matrix: | |
| os: [macos] | |
| steps: | |
| # osx signing based on https://melatonin.dev/blog/how-to-code-sign-and-notarize-macos-audio-plugins-in-ci/ | |
| - name: Import Certificates (macOS) | |
| uses: apple-actions/import-codesign-certs@v3 | |
| if: ${{ matrix.os == 'macos' }} | |
| with: | |
| p12-file-base64: ${{ secrets.DEV_ID_APP_CERT }} | |
| p12-password: ${{ secrets.DEV_ID_APP_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install jdaviz | |
| run: pip install .[test] | |
| - name: Install pyinstaller | |
| run: pip install "pyinstaller<6" | |
| - name: Create standalone binary | |
| env: | |
| DEVELOPER_ID_APPLICATION: ${{ secrets.DEVELOPER_ID_APPLICATION }} | |
| run: (cd standalone; pyinstaller ./jdaviz.spec) | |
| - name: Remove invalid files for OSX | |
| # hopefully we can improve this in the future | |
| # by using good hooks | |
| # i think the issue is that we have a . in the name, there are many | |
| # google hits on pyqt having the same issue | |
| # and we might be able to remove it after https://github.com/pyinstaller/pyinstaller/pull/7619 | |
| # is released (pyinstaller 5.13 probably) | |
| if: ${{ matrix.os == 'macos' }} | |
| run: | | |
| rm -rf standalone/dist/jdaviz.app/Contents/MacOS/skimage/.dylibs | |
| rm -rf standalone/dist/jdaviz.app/Contents/Resources/skimage/.dylibs | |
| rm -rf standalone/dist/jdaviz.app/Contents/MacOS/shapely/.dylibs | |
| rm -rf standalone/dist/jdaviz.app/Contents/Resources/shapely/.dylibs | |
| rm -rf standalone/dist/jdaviz.app/Contents/MacOS/scipy/.dylibs | |
| rm -rf standalone/dist/jdaviz.app/Contents/Resources/scipy/.dylibs | |
| - name: Codesign (OSX) | |
| if: ${{ matrix.os == 'macos' }} | |
| run: | | |
| cd standalone/dist | |
| codesign --deep --force --options=runtime --entitlements ../entitlements.plist --sign ${{ secrets.DEVELOPER_ID_APPLICATION }} --timestamp jdaviz.app | |
| - name: Create dmg (OSX) | |
| # if we do not call always() GHA will && with success() | |
| if: ${{ always() && (matrix.os == 'macos') }} | |
| # it seems ditto (not zip) should be used in combination with notarization | |
| # see https://developer.apple.com/forums/thread/116831 | |
| # but dmg also works | |
| # see https://github.com/glue-viz/glue-standalone-apps/blob/main/.github/workflows/build_stable.yml | |
| run: | | |
| rm -rf standalone/dist/jdaviz | |
| hdiutil create -volname "Jdaviz" -srcfolder standalone/dist -ov -format UDZO standalone/dist/jdaviz.dmg | |
| - name: Notary step + stapling (OSX) | |
| if: ${{ matrix.os == 'macos' }} | |
| run: | | |
| output=$(xcrun notarytool submit standalone/dist/jdaviz.dmg --apple-id ${{ secrets.NOTARIZATION_USERNAME }} --team-id ${{ secrets.TEAM_ID }} --wait --password ${{ secrets.NOTARIZATION_PASSWORD }}) || true | |
| echo "$output" | |
| uuid=$(echo "$output" | awk -F '[ :]+' '/id:/ {print $3; exit}') | |
| echo "UUID: $uuid" | |
| if [[ $output == *"status: Accepted"* ]]; then | |
| echo "Great, notarization succeeded, staple it!" | |
| xcrun stapler staple standalone/dist/jdaviz.dmg | |
| else | |
| echo "Log output for failed notarization: $uuid" | |
| xcrun notarytool log --apple-id ${{ secrets.NOTARIZATION_USERNAME }} --team-id ${{ secrets.TEAM_ID }} --password ${{ secrets.NOTARIZATION_PASSWORD }} $uuid || true | |
| fi | |
| - name: Validate app (OSX) | |
| if: ${{ matrix.os == 'macos' }} | |
| run: | | |
| spctl -a -vvv -t execute standalone/dist/jdaviz.app | |
| - name: Run jdaviz cmd in background | |
| if: ${{ matrix.os == 'macos' }} | |
| run: ./standalone/dist/jdaviz.app/Contents/MacOS/jdaviz-cli imviz& | |
| - name: Install playwright | |
| run: (pip install playwright; playwright install chromium) | |
| - name: Install pytest | |
| run: pip install pytest-playwright | |
| - name: Wait for Voila to get online | |
| uses: ifaxity/wait-on-action@a7d13170ec542bdca4ef8ac4b15e9c6aa00a6866 # v1.2.1 | |
| with: | |
| resource: tcp:8866 | |
| timeout: 60000 | |
| - name: Test standalone | |
| run: (cd standalone; touch pytest.ini; JUPYTER_PLATFORM_DIRS=1 pytest test_standalone.py --video=on) | |
| - name: Upload Test artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-results-${{ matrix.os }} | |
| path: standalone/test-results | |
| - name: Upload jdaviz standalone (OSX) | |
| if: ${{ always() && (matrix.os == 'macos') }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: jdaviz-standlone-${{ matrix.os }} | |
| path: standalone/dist/jdaviz.dmg |