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ctb committed Sep 7, 2023
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@@ -49,7 +49,7 @@ sourmash scripts manysketch fa.csv -o fa.zip -p k=21,k=31,k=51,scaled=1000,abund

### Running `multisearch`

The `multisearch` command compares one or more query genomes, and one or more subject genomes. It differs from `manysearch` by loading everything into memory.
The `multisearch` command compares one or more query genomes, and one or more subject genomes. It differs from `manysearch` by loading all genomes into memory.

`multisearch` takes two file lists as input, and outputs a CSV:
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