fix the README and snakefile to produce 10sketches.sig.zip

sourmash-bio · Sep 4, 2024 · 667b47c · 667b47c
1 parent b1bb6b0
commit 667b47c
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Showing 3 changed files with 12 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -159,7 +159,7 @@ just the dendrogram.
 
 This command:
 ```
-sourmash compare sketches/{2,47,48,49,51,52,53,59,60}.sig.zip \
+sourmash compare sketches/{2,47,48,49,51,52,53,59,60,63}.sig.zip \
     -o 10sketches.cmp \
     --labels-to 10sketches.cmp.labels_to.csv
 
@@ -351,7 +351,7 @@ sourmash scripts manysearch 10sketches.sig.zip \
     sketches/shew21.sig.zip -o 10sketches.manysearch.csv
 
 sourmash scripts clustermap1 10sketches.manysearch.csv \
-    -o clustermap1.10sketches.png
+    -o clustermap1.10sketches.png \
     -u containment -R 10sketches-categories.csv
 ```
 

diff --git a/environment.yml b/environment.yml
@@ -5,7 +5,7 @@ channels:
     - defaults
 dependencies:
     - sourmash>=4.8.8,<5
-    - sourmash_plugin_branchwater
+    - sourmash_plugin_branchwater>=0.9.7
     - pip
     - pytest
     - matplotlib

diff --git a/examples/Snakefile b/examples/Snakefile
@@ -17,6 +17,15 @@ rule all:
         "tsne2.64sketches.cmp.png",
         "3sketches.venn.png",
 
+rule make_10sketches:
+    input:
+        expand("sketches/{n}.sig.zip", n=sketches_10)
+    output:
+        "10sketches.sig.zip"
+    shell: """
+        sourmash sig cat {input} -o {output}
+    """
+
 rule cmp_3sketches:
     input:
         expand("sketches/{n}.sig.zip", n=sketches_3)