MRG: fix README code blocks #59
Workflow file for this run
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name: "run/test examples" | |
on: | |
pull_request: | |
push: | |
branches: [latest] | |
jobs: | |
mamba: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v4 | |
env: | |
CACHE_NUMBER: 1 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: 3.12 | |
channels: conda-forge,bioconda | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
mamba-version: "*" | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
- run: conda info | |
- run: conda list | |
- run: conda config --show | |
- name: install dependencies | |
shell: bash -l {0} | |
run: mamba env update -n sourmash_dev -f environment.yml | |
- name: install package | |
shell: bash -l {0} | |
run: pip install . | |
- name: run python tests | |
shell: bash -l {0} | |
run: make test | |
- name: build examples | |
shell: bash -l {0} | |
run: make cleanall |