4.7.0 release (#2497)

# sourmash release 4.7.0

Major new features:

* provide an initial plugin architecture for sourmash that supports new
signature saving & loading mechanisms (#2428)
* add plugin support for new command-line subcommands (#2438)
* debias all containment values (#2243)

Minor new features:

* Use RankLineageInfo to simplify reading lineages (#2467)
* store taxids in lineageDB (#2466)
* Use new tax classes for taxonomic summarization (#2443)
* add tax summarization dataclasses for safety and flexibility (#2439)
* add `--scaled` to sourmash compare (#2414)
* replace `lca_utils.LineagePair` with `tax_utils.LineagePair` (#2441)
* Add new classes for lineage manipulation (#2437)

Cleanup and documentation updates:

* ReadTheDocs updates (#2445)
* update `sourmash compare` command-line docs (#2400)

Developer updates:

* fix python tests by bumping tox and pip cache versions (#2424)
* Update sphinx requirement from <6,>=4.4.0 to >=4.4.0,<7 (#2430)
* Build: replace milksnake with maturin (#2393)
* importlib_metadata is a dependency on old Python versions (#2484)
* Release docs: use two separate sed commands (#2483)
* minor fixes to release behavior (#2479)
* Use screed and maturin from nixpkgs in `flake.nix` (#2481)
* update release procedure after v4.6.0 and v4.6.1 (#2386)
* Update makefile and docs (#2432)

Dependabot updates:

* Bump once_cell from 1.17.0 to 1.17.1 (#2488)
* Bump ouroboros from 0.15.5 to 0.15.6 (#2487)
* Bump memmap2 from 0.5.8 to 0.5.9 (#2486)
* Bump supercharge/redis-github-action from 1.4.0 to 1.5.0 (#2485)
* Bump proptest from 1.0.0 to 1.1.0 (#2460)
* Bump web-sys from 0.3.60 to 0.3.61 (#2461)
* Bump serde_json from 1.0.91 to 1.0.93 (#2471)
* Bump wasm-bindgen-test from 0.3.33 to 0.3.34 (#2463)
* Bump cachix/install-nix-action from 18 to 19 (#2459)
* Bump wasm-bindgen from 0.2.83 to 0.2.84 (#2464)
* Bump typed-builder from 0.11.0 to 0.12.0 (#2451)
* Bump bumpalo from 3.9.1 to 3.12.0 (#2450)
* Bump pypa/cibuildwheel from 2.11.4 to 2.12.0 (#2447)
* Bump bzip2 from 0.4.3 to 0.4.4 (#2444)
* Bump once_cell from 1.14.0 to 1.17.0 (#2429)
* Bump serde from 1.0.151 to 1.0.152 (#2423)
* Bump pypa/cibuildwheel from 2.11.3 to 2.11.4 (#2422)
* Bump serde_json from 1.0.89 to 1.0.91 (#2418)
* Bump serde from 1.0.150 to 1.0.151 (#2419)
* Bump thiserror from 1.0.37 to 1.0.38 (#2417)
* Bump finch from 0.4.3 to 0.5.0 (#2416)
* Bump rayon from 1.6.0 to 1.6.1 (#2404)
* Bump serde from 1.0.149 to 1.0.150 (#2403)
* Bump pypa/cibuildwheel from 2.11.2 to 2.11.3 (#2402)
* Bump serde from 1.0.148 to 1.0.149 (#2397)
* Bump capnp from 0.14.5 to 0.14.11 (#2396)

flake.nix

@@ -57,7 +57,7 @@
 
           sourmash = python.buildPythonPackage rec {
             pname = "sourmash";
-            version = "4.6.1";
+            version = "4.7.0";
             format = "pyproject";
 
             src = ./.;

pyproject.toml

@@ -9,7 +9,7 @@ build-backend = 'maturin'
 name = "sourmash"
 description = "tools for comparing biological sequences with k-mer sketches"
 readme = "README.md"
-version = "4.6.1"
+version = "4.7.0"
 
 authors = [
   { name="Luiz Irber", orcid="0000-0003-4371-9659" },