Merge branch 'latest' of github.com:sourmash-bio/sourmash into fix_si…

…g_from_record

.github/workflows/rust.yml

@@ -179,6 +179,13 @@ jobs:
         working-directory: pkg
         run: npm pack
 
+      - name: Publish to NPM
+        if: startsWith(github.ref, 'refs/tags/r')
+        working-directory: pkg
+        run: npm publish
+        env:
+          NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
+
       - uses: actions/upload-artifact@v4
         with:
           path: 'pkg/sourmash*.tgz'
@@ -216,7 +223,7 @@ jobs:
           args: test
 
   publish:
-    name: Publish (dry-run)
+    name: Publish (on tags, dry-run otherwise)
     runs-on: ubuntu-latest
     steps:
       - name: Checkout sources
@@ -243,6 +250,22 @@ jobs:
           command: publish
           args: --dry-run --manifest-path src/core/Cargo.toml
 
+      # Login to crates.io on tags
+      - name: login to crates.io
+        uses: actions-rs/cargo@v1
+        if: startsWith(github.ref, 'refs/tags/r')
+        with:
+          command: login
+          args: ${{ secrets.CRATES_IO_TOKEN }}
+
+      # Publish to crates.io on tags
+      - name: Publish to crates.io
+        if: startsWith(github.ref, 'refs/tags/r')
+        uses: actions-rs/cargo@v1
+        with:
+          command: publish
+          args: --manifest-path src/core/Cargo.toml
+
   minimum_rust_version:
     runs-on: ubuntu-latest
     steps:

.pre-commit-config.yaml

@@ -10,7 +10,7 @@ repos:
       - id: check-toml
       - id: debug-statements
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.2
+    rev: v0.7.3
     hooks:
       - id: ruff-format
       - id: ruff

src/core/CHANGELOG.md

@@ -7,6 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [unreleased]
 
+## [0.17.1] - 2024-11-11
+
+Changes/additions:
+* fix: Avoid re-calculating md5sum on clone and conversion to KmerMinHashBTree (#3385)
+* build: simplify Rust release (#3392)
+
 ## [0.17.0] - 2024-11-05
 
 Changes/additions:

src/core/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "sourmash"
-version = "0.17.0"
+version = "0.17.1"
 authors = ["Luiz Irber <[email protected]>", "N. Tessa Pierce-Ward <[email protected]>"]
 description = "tools for comparing biological sequences with k-mer sketches"
 repository = "https://github.com/sourmash-bio/sourmash"
@@ -32,7 +32,7 @@ byteorder = "1.4.3"
 camino = { version = "1.1.9", features = ["serde1"] }
 cfg-if = "1.0"
 counter = "0.6.0"
-csv = "1.3.0"
+csv = "1.3.1"
 enum_dispatch = "0.3.13"
 finch = { version = "0.6.0", optional = true }
 fixedbitset = "0.4.0"
@@ -59,7 +59,7 @@ serde = { version = "1.0.214", features = ["derive"] }
 serde_json = "1.0.132"
 statrs = "0.17.1"
 streaming-stats = "0.2.3"
-thiserror = "1.0"
+thiserror = "2.0"
 twox-hash = "1.6.0"
 typed-builder = "0.18.0"
 vec-collections = "0.4.3"
@@ -68,7 +68,7 @@ vec-collections = "0.4.3"
 codspeed-criterion-compat = "2.7.2"
 proptest = { version = "1.5.0", default-features = false, features = ["std"]}
 rand = "0.8.2"
-tempfile = "3.13.0"
+tempfile = "3.14.0"
 
 [[bench]]
 name = "compute"