rkyv support in signature

try to skip md5sum derive typed builder for GatherResult expose md5 start moving mastiff remove unused bigsi and sbt indices Expose iterator methods for Signature remove unused function preparing for MinHashOps Bump version, there will be many breaking changes... more splits default to large minhash, expose frozen use enum for MinHash thru FFI bug fixes and cleanup add c++ stdlib package for mamba fix finch feature try out roaring Add back check command initial update impl add semver check for rust bump once_cell fix rust ci start bringing #1943 more selection more picklist use dashmap in mem_revindex Revert "use dashmap in mem_revindex" This reverts commit 22727b7091dee2dbafd10ce707578c5085aa6cfc. bump rocksdb to 0.19 bump rocksdb to 0.20, bump MSRV to 1.60 update deps add cargo deny config use cibuildwheel configs in pyproject.toml flake cleanup fix cargo.lock tox updates don't worry with in-mem sigs for now rename mastiff to branchwater add revindex test wip collection clippy fixes start using camino for paths cargo fmt Implement MemStorage and from_paths and from_sigs cleanup Replace DatasetID with Idx Use 32-bits Idx, instead of 64 use enum_dispatch to avoid repeating code implement selection more widely working with protein in tests... add semver-checks save/load collection from rocksdb
sourmash-bio · Sep 16, 2023 · 4ede389 · 4ede389
1 parent 32ab7eb
commit 4ede389
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diff --git a/.github/workflows/dev_envs.yml b/.github/workflows/dev_envs.yml
@@ -57,7 +57,7 @@ jobs:
 
     - name: install dependencies
       shell: bash -l {0}
-      run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc
+      run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng
 
     - name: run tests for 3.9
       shell: bash -l {0}

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
@@ -234,6 +234,12 @@ jobs:
           toolchain: stable
           override: true
 
+      - name: Check semver
+        uses: obi1kenobi/cargo-semver-checks-action@v2
+        with:
+          crate-name: sourmash
+          version-tag-prefix: r
+
       - name: Make sure we can publish the sourmash crate
         uses: actions-rs/cargo@v1
         with:

diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -9,6 +9,10 @@ build:
   tools:
     python: "3.10"
     rust: "1.64"
+  apt_packages:
+    - llvm-dev
+    - libclang-dev
+    - clang
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx: