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MRG: 4.8.12 release branch (#3417)
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Developer updates:

* build: move ORCID to metadata in pyproject.toml, fix pixi (#3416)
* build: simplify Rust release (#3392)
* fix: Avoid re-calculating md5sum on clone and conversion to
KmerMinHashBTree (#3385)
* r0.15.1 release (#3304)
* update sourmash core to r0.17.0 (#3381)
* Added union method to HLL (#3293)
* Build: upgrade to newer maturin (#3366)
* CI: use supported ubuntu for codspeed (#3350)
* Fix clippy lints from 1.83 beta (#3357)
* Implement resumability for revindex (#3275)
* add `Manifest::intersect_manifest` to Rust core (#3305)
* bump sourmash core to r0.17.2 (#3399)
* change `sig_from_record` to use scaled from `Record` to downsample
(#3387)
* derive Hash for `HashFunctions` (#3344)
* enforce a single scaled on a `CollectionSet` (#3397)
* fix formatting from #3306 (#3307)
* have ruff ignore ipynb so as to avoid triggering an error during CI
(#3325)
* improve downsampling behavior on `KmerMinHash`; fix `RevIndex::gather`
bug around `scaled`. (#3342)
* panic when `FSStorage::load_sig` encounters more than one `Signature`
in a JSON record (#3333)
* propagate error from `RocksDB::open` on bad directory (#3306)
* refactor `calculate_gather_stats` to disallow repeated downsampling
(#3352)
* release core r0.17.1 (#3388)
* release sourmash rust core r0.16.0 (#3356)
* standardize on u32 for scaled, and introduce `ScaledType` (#3364)
* update plugin documentation for users (#3286)
* update sourmash core to r0.15.2 (#3338)
* when lingroups are provided, use them for `csv_summary` (#3311)
* Misc Rust updates to core (#3297)
* Resolve issue for high precision MLE estimation (#3296)

Dependabot and pre-commit CI updates:

* Bump DeterminateSystems/magic-nix-cache-action from 7 to 8 (#3319)
* Bump DeterminateSystems/nix-installer-action from 13 to 14 (#3320)
* Bump DeterminateSystems/nix-installer-action from 14 to 15 (#3374)
* Bump DeterminateSystems/nix-installer-action from 15 to 16 (#3401)
* Bump camino from 1.1.7 to 1.1.9 (#3301)
* Bump codspeed-criterion-compat from 2.6.0 to 2.7.2 (#3324)
* Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0 (#3373)
* Bump csv from 1.3.0 to 1.3.1 (#3390)
* Bump getset from 0.1.2 to 0.1.3 (#3328)
* Bump histogram from 0.11.0 to 0.11.1 (#3377)
* Bump js-sys from 0.3.72 to 0.3.74 (#3412)
* Bump memmap2 from 0.9.4 to 0.9.5 (#3326)
* Bump myst-parser from 3.0.1 to 4.0.0 (#3277)
* Bump needletail from 0.5.1 to 0.6.0 (#3376)
* Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 (#3278)
* Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 (#3332)
* Bump pypa/cibuildwheel from 2.21.1 to 2.21.2 (#3345)
* Bump pypa/cibuildwheel from 2.21.2 to 2.21.3 (#3353)
* Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (#3408)
* Bump roaring from 0.10.6 to 0.10.7 (#3413)
* Bump serde from 1.0.204 to 1.0.207 (#3289)
* Bump serde from 1.0.207 to 1.0.208 (#3298)
* Bump serde from 1.0.208 to 1.0.209 (#3310)
* Bump serde from 1.0.209 to 1.0.210 (#3318)
* Bump serde from 1.0.210 to 1.0.214 (#3368)
* Bump serde from 1.0.214 to 1.0.215 (#3403)
* Bump serde_json from 1.0.120 to 1.0.121 (#3267)
* Bump serde_json from 1.0.121 to 1.0.122 (#3280)
* Bump serde_json from 1.0.122 to 1.0.124 (#3288)
* Bump serde_json from 1.0.124 to 1.0.125 (#3302)
* Bump serde_json from 1.0.125 to 1.0.127 (#3309)
* Bump serde_json from 1.0.127 to 1.0.128 (#3316)
* Bump serde_json from 1.0.128 to 1.0.132 (#3358)
* Bump serde_json from 1.0.132 to 1.0.133 (#3402)
* Bump sphinx-design from 0.5.0 to 0.6.0 (#3268)
* Bump sphinx-design from 0.6.0 to 0.6.1 (#3276)
* Bump tempfile from 3.10.1 to 3.11.0 (#3279)
* Bump tempfile from 3.11.0 to 3.12.0 (#3287)
* Bump tempfile from 3.12.0 to 3.13.0 (#3340)
* Bump tempfile from 3.13.0 to 3.14.0 (#3391)
* Bump thiserror from 1.0.63 to 1.0.64 (#3335)
* Bump thiserror from 1.0.64 to 1.0.65 (#3367)
* Bump thiserror from 1.0.65 to 1.0.68 (#3379)
* Bump thiserror from 1.0.68 to 2.0.3 (#3389)
* Bump web-sys from 0.3.69 to 0.3.70 (#3299)
* Bump web-sys from 0.3.70 to 0.3.72 (#3354)
* Bump web-sys from 0.3.72 to 0.3.74 (#3411)
* Update pytest-cov requirement from <6.0,>=4 to >=4,<7.0 (#3375)
* Update sphinx requirement from <8,>=6 to >=6,<9 (#3269)
* Upgrade rocksdb to 0.22.0, bump MSRV to 1.66  (#3383)
* [pre-commit.ci] pre-commit autoupdate (#3281)
* [pre-commit.ci] pre-commit autoupdate (#3290)
* [pre-commit.ci] pre-commit autoupdate (#3312)
* [pre-commit.ci] pre-commit autoupdate (#3330)
* [pre-commit.ci] pre-commit autoupdate (#3336)
* [pre-commit.ci] pre-commit autoupdate (#3341)
* [pre-commit.ci] pre-commit autoupdate (#3346)
* [pre-commit.ci] pre-commit autoupdate (#3360)
* [pre-commit.ci] pre-commit autoupdate (#3369)
* [pre-commit.ci] pre-commit autoupdate (#3380)
* [pre-commit.ci] pre-commit autoupdate (#3393)
* [pre-commit.ci] pre-commit autoupdate (#3404)
* [pre-commit.ci] pre-commit autoupdate (#3409)
* [pre-commit.ci] pre-commit autoupdate (#3414)
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@ctb
ctb authored Dec 5, 2024
1 parent 1f92aa0 commit 0f48dc5
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2 changes: 1 addition & 1 deletion flake.nix
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Expand Up @@ -62,7 +62,7 @@

sourmash = python.buildPythonPackage ( commonArgs // rec {
pname = "sourmash";
version = "4.8.11";
version = "4.8.12";
format = "pyproject";

cargoDeps = rustPlatform.importCargoLock {
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -9,7 +9,7 @@ build-backend = 'maturin'
name = "sourmash"
description = "tools for comparing biological sequences with k-mer sketches"
readme = "README.md"
version = "4.8.11"
version = "4.8.12"

authors = [
{ name="Luiz Irber" },
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