MRG: bump sourmash core version to 0.14.1 #5347
Workflow file for this run
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| name: "Dev env instructions" | |
| on: | |
| pull_request: | |
| push: | |
| branches: [latest] | |
| jobs: | |
| nix: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-14] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v12 | |
| - name: Run the Magic Nix Cache | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - run: nix run .# -- --version | |
| - run: nix develop --command bash -c "tox -e py310" | |
| mamba: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: cache conda | |
| uses: actions/cache@v4 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| - name: setup conda | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| channels: conda-forge,bioconda | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| mamba-version: "*" | |
| activate-environment: sourmash_dev | |
| auto-activate-base: false | |
| use-only-tar-bz2: true | |
| - name: install dependencies | |
| shell: bash -l {0} | |
| run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng | |
| - name: run tests for 3.10 | |
| shell: bash -l {0} | |
| run: tox -e py310 |