Python tests

Fix many warnings from `PYTHONDEVMODE=1` (#2849) #5510

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Run time

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Job	Run time
test (ubuntu-22.04, 3.12)	5m 25s
test (ubuntu-22.04, 3.11)	3m 28s
test (ubuntu-22.04, 3.10)	5m 24s
test (macos-latest, 3.12)	11m 19s
test (macos-latest, 3.11)	10m 54s
test (macos-latest, 3.10)	12m 53s
	49m 23s