MRG: minor updates to release procedure after 4.8.4 #4133
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: "Dev env instructions" | |
on: | |
pull_request: | |
push: | |
branches: [latest] | |
jobs: | |
nix: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: cachix/install-nix-action@v23 | |
with: | |
extra_nix_config: | | |
access-tokens = github.com=${{ secrets.GITHUB_TOKEN }} | |
- uses: cachix/cachix-action@v12 | |
with: | |
name: sourmash-bio | |
authToken: '${{ secrets.CACHIX_AUTH_TOKEN }}' | |
- run: nix run .# -- --version | |
- run: nix-shell --command "tox -e py310" | |
mamba: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v3 | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 | |
with: | |
auto-update-conda: true | |
python-version: 3.9 | |
channels: conda-forge,bioconda | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
mamba-version: "*" | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
use-only-tar-bz2: true | |
- name: install dependencies | |
shell: bash -l {0} | |
run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc | |
- name: run tests for 3.9 | |
shell: bash -l {0} | |
run: tox -e py39 |