MRG: improve downsampling behavior on KmerMinHash
; fix RevIndex::gather
bug around scaled
.
#5749
Workflow file for this run
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name: "Dev env instructions" | |
on: | |
pull_request: | |
push: | |
branches: [latest] | |
concurrency: | |
group: ${{ github.ref }} | |
cancel-in-progress: ${{ github.ref != 'refs/heads/latest' }} | |
jobs: | |
nix: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-14] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Install Nix | |
uses: DeterminateSystems/nix-installer-action@v14 | |
- name: Run the Magic Nix Cache | |
uses: DeterminateSystems/magic-nix-cache-action@v8 | |
- run: nix run .# -- --version | |
- run: nix develop --command bash -c "tox -e py310" | |
pixi: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-14] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: set up pixi | |
uses: prefix-dev/[email protected] | |
with: | |
pixi-version: v0.26.1 | |
cache: true | |
frozen: true | |
- name: run tests for 3.10 | |
shell: pixi run bash {0} | |
run: tox -e py310 | |
mamba: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-14] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v4 | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca | |
with: | |
python-version: "3.10" | |
miniforge-version: latest | |
environment-file: dev.yml | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
- name: run tests for 3.10 | |
shell: bash -l {0} | |
run: tox -e py310 |