feat: RocksDB storage and self-contained RevIndex with internal storage #5448
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "Dev env instructions" | |
| on: | |
| pull_request: | |
| push: | |
| branches: [latest] | |
| jobs: | |
| nix: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-14] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v13 | |
| - name: Run the Magic Nix Cache | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - run: nix run .# -- --version | |
| - run: nix develop --command bash -c "tox -e py310" | |
| mamba: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: cache conda | |
| uses: actions/cache@v4 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| - name: setup conda | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| channels: conda-forge,bioconda | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| mamba-version: "*" | |
| activate-environment: sourmash_dev | |
| auto-activate-base: false | |
| use-only-tar-bz2: true | |
| - name: install dependencies | |
| shell: bash -l {0} | |
| run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng | |
| - name: run tests for 3.10 | |
| shell: bash -l {0} | |
| run: tox -e py310 |