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15 Open 37 Closed
15 Open 37 Closed
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Issues list

"Error in rule pasta" when aligning paralogous gene sequences
#71 opened Oct 24, 2024 by finn314
The alignment file has no sequences. PASTA quits.
#69 opened Jun 3, 2024 by TanHoa-DinhNguyen
Tree parse error: unexpected token '_os_78_oe_ropschr02g03077' -- not recognized as a sequence name
#68 opened Mar 25, 2024 by erya-song
1
Adapt Pasta to the current version of DendroPy
#67 opened Mar 4, 2024 by simeonborko
1
Failed to run hmmeralign
#63 opened Feb 21, 2023 by marinamashintsova
5
Continue crashed analysis from tree inference step
#61 opened Aug 9, 2021 by diegomarquezp
8
TreeShrink error
#50 opened Apr 26, 2020 by sjfleck
8
Pasta fails with homologs and muscle -> no sequences
#48 opened Apr 8, 2020 by hhg7
4
Better describe the --treeshrink-filter option
#41 opened Jul 17, 2019 by smirarab
@uym2
Bioconductor install doesn't work
#40 opened Mar 4, 2019 by brendanf
1
Issues in setup.py
#30 opened Apr 15, 2018 by niemasd
10
init_aln is not registered as a temporary directory that was created by this process
#27 opened Mar 28, 2018 by jpearl01
Provide the merging machinery as an stand-alone app enhancement
#9 opened Jul 7, 2014 by smirarab
GUI sometimes refuses to start a new job when the old one is prematurely stopped. bug
#8 opened Jul 7, 2014 by smirarab
mask initial alignment from hmmer based on insertion columns. enhancement
#5 opened Mar 4, 2014 by smirarab
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