Skip to content

Commit

Permalink
fix list
Browse files Browse the repository at this point in the history
  • Loading branch information
haphantran committed Apr 6, 2024
1 parent 166329e commit 89e2cfb
Show file tree
Hide file tree
Showing 2 changed files with 33 additions and 39 deletions.
62 changes: 28 additions & 34 deletions Documentation.md
Original file line number Diff line number Diff line change
@@ -1,41 +1,39 @@
---
layout: default
---
# Documentation

# Documentation

**All of the key features in SlicerTrack will be available in the extension’s** <mark style="background-color: lightgray">Inputs</mark> **and** <mark style="background-color: lightgray">Sequences</mark> **section**

1. Open SlicerTrack by selecting the (1) dropdown menu > (2) SlicerTrack > (3) Track
<br>
1. Open SlicerTrack by selecting the (1) dropdown menu > (2) SlicerTrack > (3) Track
<br>
<img src='resources/screenshots/ST_Document1.png' style='max-width: 739px;'/>
<br>
2. Load Inputs

Click the button next to the file path textbox to select the inputs easily

- **Cine Images Folder:** Select the folder with cine images
- **Segmentation File:** Select the 3D segmentation file
- **Transformation File:** Select a transformation file
<br>
<img src='resources/screenshots/ST_Document2.png' style='max-width: 739px;'/>
<br>
3. Designate Transformation Columns
- Translation:
- **X_Dicom:** Select the header for the X-direction transformations
- **Y_Dicom:** Select the header for the Y-direction transformations
- **Z_Dicom:** Select the header for the Z-direction transformations
- Click **Apply Transformations**
<br>
<br>
2. Load Inputs

Click the button next to the file path textbox to select the inputs easily

- **Cine Images Folder:** Select the folder with cine images
- **Segmentation File:** Select the 3D segmentation file
- **Transformation File:** Select a transformation file

<br>
<img src='resources/screenshots/ST_Document2.png' style='max-width: 739px;'/>
<br>

1. Designate Transformation Columns - Translation:
- **X_Dicom:** Select the header for the X-direction transformations
- **Y_Dicom:** Select the header for the Y-direction transformations
- **Z_Dicom:** Select the header for the Z-direction transformations - Click **Apply Transformations**
<br>
<img src='resources/screenshots/ST_Document3.png' style='max-width: 739px;'/>
<br>
<br>

4. Review Tracking Results
- After creating transform nodes from transformation data, the cine images and 3D segmentation are shown in the slice viewers
- Use the built-in toolbar to replay tracking data
<br>
1. Review Tracking Results - After creating transform nodes from transformation data, the cine images and 3D segmentation are shown in the slice viewers - Use the built-in toolbar to replay tracking data
<br>
<img src='resources/screenshots/ST_Document5.png' style='max-width: 739px;'/>
<br>
<br>

## Additional Features

Expand All @@ -45,8 +43,7 @@ layout: default
- Insect frame number into the frame box to move to that specific frame
- Adjust the frames per second from 00.00 - 30.00 fps
- Click the X buttons to delete a specific input
- Click the Reset All button to remove all inputs

- Click the Reset All button to remove all inputs

## Sample Dataset

Expand All @@ -60,15 +57,12 @@ Before accessing or utilizing this data, please refer to and adhere to the TCIA

Warm regards


**Sample Data set can be download from** [here](https://drive.google.com/drive/folders/1qJj53YfGM4Q7atsI-XZyySvR-F98ENXA?usp=sharing)



### Pre-requisites

- 3D Slicer software version 5.6.1 installed
- 3D Slicer software version 5.6.1 installed

### Install the Extension

- Get the extension install
- Get the extension install
10 changes: 5 additions & 5 deletions css/pages.css
Original file line number Diff line number Diff line change
Expand Up @@ -176,11 +176,11 @@ h3.thinner {

#hero-spot {
height: 180px;
background: -webkit-linear-gradient(top, #b3b4b4, #313a3c);
background: -moz-linear-gradient(top, #b3b4b4, #313a3c);
background: -ms-linear-gradient(top, #b3b4b4, #313a3c);
background: -o-linear-gradient(top, #b3b4b4, #313a3c);
background: gradient(top, #b3b4b4, #313a3c);
background: -webkit-linear-gradient(top, #9da3a3, #000000);
background: -moz-linear-gradient(top, #9da3a3, #000000);
background: -ms-linear-gradient(top, #9da3a3, #000000);
background: -o-linear-gradient(top, #9da3a3, #000000);
background: gradient(top, #9da3a3, #000000);
filter: progid:DXImageTransform.Microsoft.gradient( startColorstr='#4bb0c3', endColorstr='#0d83a3',GradientType=0 );
}

Expand Down

0 comments on commit 89e2cfb

Please sign in to comment.