-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Automated deployment with updated cache 2024-10-17
- Loading branch information
github-actions
committed
Oct 17, 2024
1 parent
c11b361
commit 71939b0
Showing
9 changed files
with
1,481 additions
and
380 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| { | ||
| "cosigt": "/usr/local/bin/cosigt" | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,143 @@ | ||
| { | ||
| "2to3": "/usr/local/bin/2to3", | ||
| "2to3-3.12": "/usr/local/bin/2to3-3.12", | ||
| "ace2sam": "/usr/local/bin/ace2sam", | ||
| "adig": "/usr/local/bin/adig", | ||
| "ahost": "/usr/local/bin/ahost", | ||
| "annot-tsv": "/usr/local/bin/annot-tsv", | ||
| "bgzip": "/usr/local/bin/bgzip", | ||
| "blast2sam.pl": "/usr/local/bin/blast2sam.pl", | ||
| "bowtie2sam.pl": "/usr/local/bin/bowtie2sam.pl", | ||
| "bunzip2": "/usr/local/bin/bunzip2", | ||
| "bzcat": "/usr/local/bin/bzcat", | ||
| "bzcmp": "/usr/local/bin/bzcmp", | ||
| "bzdiff": "/usr/local/bin/bzdiff", | ||
| "bzegrep": "/usr/local/bin/bzegrep", | ||
| "bzfgrep": "/usr/local/bin/bzfgrep", | ||
| "bzgrep": "/usr/local/bin/bzgrep", | ||
| "bzip2": "/usr/local/bin/bzip2", | ||
| "bzip2recover": "/usr/local/bin/bzip2recover", | ||
| "bzless": "/usr/local/bin/bzless", | ||
| "bzmore": "/usr/local/bin/bzmore", | ||
| "c_rehash": "/usr/local/bin/c_rehash", | ||
| "captoinfo": "/usr/local/bin/captoinfo", | ||
| "clear": "/usr/local/bin/clear", | ||
| "compile_et": "/usr/local/bin/compile_et", | ||
| "curl-config": "/usr/local/bin/curl-config", | ||
| "devider": "/usr/local/bin/devider", | ||
| "export2sam.pl": "/usr/local/bin/export2sam.pl", | ||
| "fasta-sanitize.pl": "/usr/local/bin/fasta-sanitize.pl", | ||
| "gss-client": "/usr/local/bin/gss-client", | ||
| "haplotag_bam": "/usr/local/bin/haplotag_bam", | ||
| "htsfile": "/usr/local/bin/htsfile", | ||
| "idle3": "/usr/local/bin/idle3", | ||
| "idle3.12": "/usr/local/bin/idle3.12", | ||
| "infocmp": "/usr/local/bin/infocmp", | ||
| "infotocap": "/usr/local/bin/infotocap", | ||
| "interpolate_sam.pl": "/usr/local/bin/interpolate_sam.pl", | ||
| "k5srvutil": "/usr/local/bin/k5srvutil", | ||
| "k8": "/usr/local/bin/k8", | ||
| "kadmin": "/usr/local/bin/kadmin", | ||
| "kdestroy": "/usr/local/bin/kdestroy", | ||
| "keyctl": "/usr/local/bin/keyctl", | ||
| "kinit": "/usr/local/bin/kinit", | ||
| "klist": "/usr/local/bin/klist", | ||
| "kpasswd": "/usr/local/bin/kpasswd", | ||
| "krb5-config": "/usr/local/bin/krb5-config", | ||
| "ksu": "/usr/local/bin/ksu", | ||
| "kswitch": "/usr/local/bin/kswitch", | ||
| "ktutil": "/usr/local/bin/ktutil", | ||
| "kvno": "/usr/local/bin/kvno", | ||
| "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", | ||
| "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", | ||
| "lofreq": "/usr/local/bin/lofreq", | ||
| "lofreq2_call_pparallel.py": "/usr/local/bin/lofreq2_call_pparallel.py", | ||
| "lofreq2_indel_ovlp.py": "/usr/local/bin/lofreq2_indel_ovlp.py", | ||
| "lofreq2_somatic.py": "/usr/local/bin/lofreq2_somatic.py", | ||
| "lofreq2_vcfplot.py": "/usr/local/bin/lofreq2_vcfplot.py", | ||
| "lzcat": "/usr/local/bin/lzcat", | ||
| "lzcmp": "/usr/local/bin/lzcmp", | ||
| "lzdiff": "/usr/local/bin/lzdiff", | ||
| "lzegrep": "/usr/local/bin/lzegrep", | ||
| "lzfgrep": "/usr/local/bin/lzfgrep", | ||
| "lzgrep": "/usr/local/bin/lzgrep", | ||
| "lzless": "/usr/local/bin/lzless", | ||
| "lzma": "/usr/local/bin/lzma", | ||
| "lzmadec": "/usr/local/bin/lzmadec", | ||
| "lzmainfo": "/usr/local/bin/lzmainfo", | ||
| "lzmore": "/usr/local/bin/lzmore", | ||
| "maq2sam-long": "/usr/local/bin/maq2sam-long", | ||
| "maq2sam-short": "/usr/local/bin/maq2sam-short", | ||
| "md5fa": "/usr/local/bin/md5fa", | ||
| "md5sum-lite": "/usr/local/bin/md5sum-lite", | ||
| "minimap2": "/usr/local/bin/minimap2", | ||
| "ncurses6-config": "/usr/local/bin/ncurses6-config", | ||
| "ncursesw6-config": "/usr/local/bin/ncursesw6-config", | ||
| "nghttp": "/usr/local/bin/nghttp", | ||
| "nghttpd": "/usr/local/bin/nghttpd", | ||
| "nghttpx": "/usr/local/bin/nghttpx", | ||
| "novo2sam.pl": "/usr/local/bin/novo2sam.pl", | ||
| "openssl": "/usr/local/bin/openssl", | ||
| "paftools.js": "/usr/local/bin/paftools.js", | ||
| "pip": "/usr/local/bin/pip", | ||
| "pip3": "/usr/local/bin/pip3", | ||
| "plot-ampliconstats": "/usr/local/bin/plot-ampliconstats", | ||
| "plot-bamstats": "/usr/local/bin/plot-bamstats", | ||
| "psl2sam.pl": "/usr/local/bin/psl2sam.pl", | ||
| "pydoc": "/usr/local/bin/pydoc", | ||
| "pydoc3": "/usr/local/bin/pydoc3", | ||
| "pydoc3.12": "/usr/local/bin/pydoc3.12", | ||
| "python": "/usr/local/bin/python", | ||
| "python3": "/usr/local/bin/python3", | ||
| "python3-config": "/usr/local/bin/python3-config", | ||
| "python3.1": "/usr/local/bin/python3.1", | ||
| "python3.12": "/usr/local/bin/python3.12", | ||
| "python3.12-config": "/usr/local/bin/python3.12-config", | ||
| "reset": "/usr/local/bin/reset", | ||
| "run_devider_pipeline": "/usr/local/bin/run_devider_pipeline", | ||
| "sam2vcf.pl": "/usr/local/bin/sam2vcf.pl", | ||
| "samtools": "/usr/local/bin/samtools", | ||
| "samtools.pl": "/usr/local/bin/samtools.pl", | ||
| "sclient": "/usr/local/bin/sclient", | ||
| "sdust": "/usr/local/bin/sdust", | ||
| "seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl", | ||
| "sim_client": "/usr/local/bin/sim_client", | ||
| "soap2sam.pl": "/usr/local/bin/soap2sam.pl", | ||
| "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", | ||
| "tabix": "/usr/local/bin/tabix", | ||
| "tabs": "/usr/local/bin/tabs", | ||
| "tclsh": "/usr/local/bin/tclsh", | ||
| "tclsh8.6": "/usr/local/bin/tclsh8.6", | ||
| "tic": "/usr/local/bin/tic", | ||
| "toe": "/usr/local/bin/toe", | ||
| "tput": "/usr/local/bin/tput", | ||
| "tset": "/usr/local/bin/tset", | ||
| "unlzma": "/usr/local/bin/unlzma", | ||
| "unxz": "/usr/local/bin/unxz", | ||
| "unzstd": "/usr/local/bin/unzstd", | ||
| "uuclient": "/usr/local/bin/uuclient", | ||
| "wgsim": "/usr/local/bin/wgsim", | ||
| "wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl", | ||
| "wheel": "/usr/local/bin/wheel", | ||
| "wish": "/usr/local/bin/wish", | ||
| "wish8.6": "/usr/local/bin/wish8.6", | ||
| "write_contig_headers_vcf.py": "/usr/local/bin/write_contig_headers_vcf.py", | ||
| "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", | ||
| "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", | ||
| "xz": "/usr/local/bin/xz", | ||
| "xzcat": "/usr/local/bin/xzcat", | ||
| "xzcmp": "/usr/local/bin/xzcmp", | ||
| "xzdec": "/usr/local/bin/xzdec", | ||
| "xzdiff": "/usr/local/bin/xzdiff", | ||
| "xzegrep": "/usr/local/bin/xzegrep", | ||
| "xzfgrep": "/usr/local/bin/xzfgrep", | ||
| "xzgrep": "/usr/local/bin/xzgrep", | ||
| "xzless": "/usr/local/bin/xzless", | ||
| "xzmore": "/usr/local/bin/xzmore", | ||
| "zoom2sam.pl": "/usr/local/bin/zoom2sam.pl", | ||
| "zstd": "/usr/local/bin/zstd", | ||
| "zstdcat": "/usr/local/bin/zstdcat", | ||
| "zstdgrep": "/usr/local/bin/zstdgrep", | ||
| "zstdless": "/usr/local/bin/zstdless", | ||
| "zstdmt": "/usr/local/bin/zstdmt" | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| { | ||
| "gafpack": "/usr/local/bin/gafpack" | ||
| } |
176 changes: 176 additions & 0 deletions
176
quay.io/biocontainers/l/longcallr_nn:0.0.1--pyhdfd78af_0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,176 @@ | ||
| { | ||
| "2to3": "/usr/local/bin/2to3", | ||
| "2to3-3.9": "/usr/local/bin/2to3-3.9", | ||
| "adig": "/usr/local/bin/adig", | ||
| "ahost": "/usr/local/bin/ahost", | ||
| "bunzip2": "/usr/local/bin/bunzip2", | ||
| "bzcat": "/usr/local/bin/bzcat", | ||
| "bzcmp": "/usr/local/bin/bzcmp", | ||
| "bzdiff": "/usr/local/bin/bzdiff", | ||
| "bzegrep": "/usr/local/bin/bzegrep", | ||
| "bzfgrep": "/usr/local/bin/bzfgrep", | ||
| "bzgrep": "/usr/local/bin/bzgrep", | ||
| "bzip2": "/usr/local/bin/bzip2", | ||
| "bzip2recover": "/usr/local/bin/bzip2recover", | ||
| "bzless": "/usr/local/bin/bzless", | ||
| "bzmore": "/usr/local/bin/bzmore", | ||
| "c_rehash": "/usr/local/bin/c_rehash", | ||
| "captoinfo": "/usr/local/bin/captoinfo", | ||
| "cjpeg": "/usr/local/bin/cjpeg", | ||
| "clear": "/usr/local/bin/clear", | ||
| "compile_et": "/usr/local/bin/compile_et", | ||
| "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", | ||
| "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", | ||
| "curl-config": "/usr/local/bin/curl-config", | ||
| "derb": "/usr/local/bin/derb", | ||
| "djpeg": "/usr/local/bin/djpeg", | ||
| "f2py": "/usr/local/bin/f2py", | ||
| "f2py3": "/usr/local/bin/f2py3", | ||
| "f2py3.9": "/usr/local/bin/f2py3.9", | ||
| "fax2ps": "/usr/local/bin/fax2ps", | ||
| "fax2tiff": "/usr/local/bin/fax2tiff", | ||
| "freetype-config": "/usr/local/bin/freetype-config", | ||
| "genbrk": "/usr/local/bin/genbrk", | ||
| "gencfu": "/usr/local/bin/gencfu", | ||
| "gencnval": "/usr/local/bin/gencnval", | ||
| "gendict": "/usr/local/bin/gendict", | ||
| "genrb": "/usr/local/bin/genrb", | ||
| "gss-client": "/usr/local/bin/gss-client", | ||
| "hwloc-annotate": "/usr/local/bin/hwloc-annotate", | ||
| "hwloc-bind": "/usr/local/bin/hwloc-bind", | ||
| "hwloc-calc": "/usr/local/bin/hwloc-calc", | ||
| "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", | ||
| "hwloc-diff": "/usr/local/bin/hwloc-diff", | ||
| "hwloc-distrib": "/usr/local/bin/hwloc-distrib", | ||
| "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", | ||
| "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", | ||
| "hwloc-info": "/usr/local/bin/hwloc-info", | ||
| "hwloc-ls": "/usr/local/bin/hwloc-ls", | ||
| "hwloc-patch": "/usr/local/bin/hwloc-patch", | ||
| "hwloc-ps": "/usr/local/bin/hwloc-ps", | ||
| "icu-config": "/usr/local/bin/icu-config", | ||
| "icuexportdata": "/usr/local/bin/icuexportdata", | ||
| "icuinfo": "/usr/local/bin/icuinfo", | ||
| "idle3": "/usr/local/bin/idle3", | ||
| "idle3.9": "/usr/local/bin/idle3.9", | ||
| "infocmp": "/usr/local/bin/infocmp", | ||
| "infotocap": "/usr/local/bin/infotocap", | ||
| "jpegtran": "/usr/local/bin/jpegtran", | ||
| "jpgicc": "/usr/local/bin/jpgicc", | ||
| "k5srvutil": "/usr/local/bin/k5srvutil", | ||
| "kadmin": "/usr/local/bin/kadmin", | ||
| "kdestroy": "/usr/local/bin/kdestroy", | ||
| "keyctl": "/usr/local/bin/keyctl", | ||
| "kinit": "/usr/local/bin/kinit", | ||
| "klist": "/usr/local/bin/klist", | ||
| "kpasswd": "/usr/local/bin/kpasswd", | ||
| "krb5-config": "/usr/local/bin/krb5-config", | ||
| "ksu": "/usr/local/bin/ksu", | ||
| "kswitch": "/usr/local/bin/kswitch", | ||
| "ktutil": "/usr/local/bin/ktutil", | ||
| "kvno": "/usr/local/bin/kvno", | ||
| "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", | ||
| "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", | ||
| "libpng-config": "/usr/local/bin/libpng-config", | ||
| "libpng16-config": "/usr/local/bin/libpng16-config", | ||
| "linkicc": "/usr/local/bin/linkicc", | ||
| "longcallR_nn": "/usr/local/bin/longcallR_nn", | ||
| "lstopo": "/usr/local/bin/lstopo", | ||
| "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", | ||
| "lzcat": "/usr/local/bin/lzcat", | ||
| "lzcmp": "/usr/local/bin/lzcmp", | ||
| "lzdiff": "/usr/local/bin/lzdiff", | ||
| "lzegrep": "/usr/local/bin/lzegrep", | ||
| "lzfgrep": "/usr/local/bin/lzfgrep", | ||
| "lzgrep": "/usr/local/bin/lzgrep", | ||
| "lzless": "/usr/local/bin/lzless", | ||
| "lzma": "/usr/local/bin/lzma", | ||
| "lzmadec": "/usr/local/bin/lzmadec", | ||
| "lzmainfo": "/usr/local/bin/lzmainfo", | ||
| "lzmore": "/usr/local/bin/lzmore", | ||
| "makeconv": "/usr/local/bin/makeconv", | ||
| "ncurses6-config": "/usr/local/bin/ncurses6-config", | ||
| "ncursesw6-config": "/usr/local/bin/ncursesw6-config", | ||
| "nghttp": "/usr/local/bin/nghttp", | ||
| "nghttpd": "/usr/local/bin/nghttpd", | ||
| "nghttpx": "/usr/local/bin/nghttpx", | ||
| "normalizer": "/usr/local/bin/normalizer", | ||
| "openssl": "/usr/local/bin/openssl", | ||
| "opj_compress": "/usr/local/bin/opj_compress", | ||
| "opj_decompress": "/usr/local/bin/opj_decompress", | ||
| "opj_dump": "/usr/local/bin/opj_dump", | ||
| "pal2rgb": "/usr/local/bin/pal2rgb", | ||
| "pip": "/usr/local/bin/pip", | ||
| "pip3": "/usr/local/bin/pip3", | ||
| "pkgdata": "/usr/local/bin/pkgdata", | ||
| "png-fix-itxt": "/usr/local/bin/png-fix-itxt", | ||
| "pngfix": "/usr/local/bin/pngfix", | ||
| "ppm2tiff": "/usr/local/bin/ppm2tiff", | ||
| "protoc": "/usr/local/bin/protoc", | ||
| "psicc": "/usr/local/bin/psicc", | ||
| "pydoc": "/usr/local/bin/pydoc", | ||
| "pydoc3": "/usr/local/bin/pydoc3", | ||
| "pydoc3.9": "/usr/local/bin/pydoc3.9", | ||
| "python": "/usr/local/bin/python", | ||
| "python3": "/usr/local/bin/python3", | ||
| "python3-config": "/usr/local/bin/python3-config", | ||
| "python3.9": "/usr/local/bin/python3.9", | ||
| "python3.9-config": "/usr/local/bin/python3.9-config", | ||
| "raw2tiff": "/usr/local/bin/raw2tiff", | ||
| "rdjpgcom": "/usr/local/bin/rdjpgcom", | ||
| "reset": "/usr/local/bin/reset", | ||
| "sclient": "/usr/local/bin/sclient", | ||
| "sim_client": "/usr/local/bin/sim_client", | ||
| "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", | ||
| "tabs": "/usr/local/bin/tabs", | ||
| "tclsh": "/usr/local/bin/tclsh", | ||
| "tclsh8.6": "/usr/local/bin/tclsh8.6", | ||
| "tic": "/usr/local/bin/tic", | ||
| "tiff2bw": "/usr/local/bin/tiff2bw", | ||
| "tiff2pdf": "/usr/local/bin/tiff2pdf", | ||
| "tiff2ps": "/usr/local/bin/tiff2ps", | ||
| "tiff2rgba": "/usr/local/bin/tiff2rgba", | ||
| "tiffcmp": "/usr/local/bin/tiffcmp", | ||
| "tiffcp": "/usr/local/bin/tiffcp", | ||
| "tiffcrop": "/usr/local/bin/tiffcrop", | ||
| "tiffdither": "/usr/local/bin/tiffdither", | ||
| "tiffdump": "/usr/local/bin/tiffdump", | ||
| "tiffinfo": "/usr/local/bin/tiffinfo", | ||
| "tiffmedian": "/usr/local/bin/tiffmedian", | ||
| "tiffset": "/usr/local/bin/tiffset", | ||
| "tiffsplit": "/usr/local/bin/tiffsplit", | ||
| "tificc": "/usr/local/bin/tificc", | ||
| "toe": "/usr/local/bin/toe", | ||
| "torchrun": "/usr/local/bin/torchrun", | ||
| "tput": "/usr/local/bin/tput", | ||
| "transicc": "/usr/local/bin/transicc", | ||
| "tset": "/usr/local/bin/tset", | ||
| "unlzma": "/usr/local/bin/unlzma", | ||
| "unxz": "/usr/local/bin/unxz", | ||
| "unzstd": "/usr/local/bin/unzstd", | ||
| "uuclient": "/usr/local/bin/uuclient", | ||
| "wheel": "/usr/local/bin/wheel", | ||
| "wish": "/usr/local/bin/wish", | ||
| "wish8.6": "/usr/local/bin/wish8.6", | ||
| "wrjpgcom": "/usr/local/bin/wrjpgcom", | ||
| "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", | ||
| "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", | ||
| "xml2-config": "/usr/local/bin/xml2-config", | ||
| "xmlcatalog": "/usr/local/bin/xmlcatalog", | ||
| "xmllint": "/usr/local/bin/xmllint", | ||
| "xz": "/usr/local/bin/xz", | ||
| "xzcat": "/usr/local/bin/xzcat", | ||
| "xzcmp": "/usr/local/bin/xzcmp", | ||
| "xzdec": "/usr/local/bin/xzdec", | ||
| "xzdiff": "/usr/local/bin/xzdiff", | ||
| "xzegrep": "/usr/local/bin/xzegrep", | ||
| "xzfgrep": "/usr/local/bin/xzfgrep", | ||
| "xzgrep": "/usr/local/bin/xzgrep", | ||
| "xzless": "/usr/local/bin/xzless", | ||
| "xzmore": "/usr/local/bin/xzmore", | ||
| "zstd": "/usr/local/bin/zstd", | ||
| "zstdcat": "/usr/local/bin/zstdcat", | ||
| "zstdgrep": "/usr/local/bin/zstdgrep", | ||
| "zstdless": "/usr/local/bin/zstdless", | ||
| "zstdmt": "/usr/local/bin/zstdmt" | ||
| } |
Oops, something went wrong.