Update Cache #239

	name: Update Cache

	on:
	workflow_dispatch:
	schedule:
	# Weekly, monday and thursday
	- cron: 0 0 * * 1,4

	jobs:
	update-cache:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v3

	- name: Create conda environment
	run: conda create --quiet -c conda-forge --name shpc spython

	- name: Derive BioContainers List
	run: \|
	export PATH="/usr/share/miniconda/bin:$PATH"
	source activate shpc
	pip install -r .github/scripts/dev-requirements.txt
	python .github/scripts/get_biocontainers.py /tmp/biocontainers.txt
	head /tmp/biocontainers.txt

	- name: Make Space
	run: \|
	sudo rm -rf /usr/share/dotnet
	sudo rm -rf /usr/local/lib/android
	sudo rm -rf /opt/ghc

	# Manual run commands (don't forget to export GITHUB_TOKEN)
	# container-discovery update-cache --root . --repo-letter-prefix --namespace quay.io/biocontainers /tmp/biocontainers.txt
	# container-discovery update-counts --namespace quay.io/biocontainers --root . --repo-letter-prefix /tmp/biocontainers
	- name: Update Cache Action
	uses: singularityhub/container-executable-discovery@main
	with:
	token: ${{ secrets.GITHUB_TOKEN }}
	repo-letter-prefix: true
	listing: /tmp/biocontainers.txt
	namespace: quay.io/biocontainers
	dry_run: ${{ github.event_name == 'pull_request' }}

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