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Flip XZ axis in PCA transform plots
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jessicasyu committed Aug 5, 2024
1 parent 1f52716 commit 73960f7
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Showing 2 changed files with 49 additions and 29 deletions.
10 changes: 5 additions & 5 deletions scripts/figures.js
Original file line number Diff line number Diff line change
Expand Up @@ -750,18 +750,18 @@ function generate_pca_transform() {
.domain(linspace(xaxis.bounds[0] - xaxis.padding, xaxis.bounds[1] + xaxis.padding, COLORMAP.length))

let INSET_SIZE = 350
let padding = 10
let padding = 20
let hscale = 0.4
let vscale = 0.25
let lscale = 0.25
let offset = (width - ((1 + vscale) * INSET_SIZE) - padding) / 2
let INSETS = G.append("g").attr("transform", `translate(${offset},0)`)
let XY = INSETS.append("g").attr("transform", `translate(${vscale * INSET_SIZE + padding},0)`)
createInset(XY, INSET_SIZE, hscale * INSET_SIZE, "X", "Y")
createInset(XY, INSET_SIZE, hscale * INSET_SIZE, "X", "Y", false)
let XZ = INSETS.append("g").attr("transform", `translate(${vscale * INSET_SIZE + padding},${hscale * INSET_SIZE + padding})`)
createInset(XZ, INSET_SIZE, lscale * INSET_SIZE, "X", "Z")
createInset(XZ, INSET_SIZE, lscale * INSET_SIZE, "X", "Z", true)
let YZ = INSETS.append("g").attr("transform", `translate(0,0)`)
createInset(YZ, vscale * INSET_SIZE, hscale * INSET_SIZE, "Y", "Z")
createInset(YZ, vscale * INSET_SIZE, hscale * INSET_SIZE, "Z", "Y", false)

Promise.all([
d3.csv("data/actin_compression_pca_results.csv"),
Expand Down Expand Up @@ -872,7 +872,7 @@ function generate_pca_transform() {
.attr("d", function(d) {
let makePath = d3.line()
.x(m => xscale_inset(m))
.y((m,i) => yscale_inset(d.z[i]))
.y((m,i) => yscale_inset(-d.z[i]))
return makePath(d.x)
})
.attr("fill", d => "none")
Expand Down
68 changes: 44 additions & 24 deletions scripts/utilities.js
Original file line number Diff line number Diff line change
Expand Up @@ -131,30 +131,50 @@ function makeLabel(simulator, velocity, repeat) {
}
}

function createInset(g, width, height, a, b) {
function createInset(g, width, height, a, b, invert) {
g.append("rect")
.attr("width", width)
.attr("height", height)
.attr("fill", "none")
.attr('stroke', '#555')
.attr("stroke-dasharray", "1,2")
.attr("stroke-width", 0.5)
g.append("path")
.attr("d", `m 0,${height} l 0,-15 m 0,15 l 15,0`)
.attr("fill", "none")
.attr('stroke', '#fff')
g.append("text")
.attr("x", 0)
.attr("y", height - 20)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(b)
g.append("text")
.attr("x", 21)
.attr("y", height + 4)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(a)
.attr("width", width)
.attr("height", height)
.attr("fill", "none")
.attr('stroke', '#555')
.attr("stroke-dasharray", "1,2")
.attr("stroke-width", 0.5)

if (invert) {
g.append("path")
.attr("d", `m 0,0 l 0,15 m 0,-15 l 15,0`)
.attr("fill", "none")
.attr('stroke', '#fff')
g.append("text")
.attr("x", 0)
.attr("y", 28)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(b)
g.append("text")
.attr("x", 21)
.attr("y", 4)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(a)
} else {
g.append("path")
.attr("d", `m 0,${height} l 0,-15 m 0,15 l 15,0`)
.attr("fill", "none")
.attr('stroke', '#fff')
g.append("text")
.attr("x", 0)
.attr("y", height - 20)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(b)
g.append("text")
.attr("x", 21)
.attr("y", height + 4)
.attr("fill", "#fff")
.attr("text-anchor", "middle")
.text(a)
}
}

function individualVizLink(simulator, velocity, replicate) {
Expand All @@ -176,4 +196,4 @@ function formatVelocity(velocity) {
v = "0" + v
}
return v
}
}

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