ci.yml

name: CI

on:
  push:
    branches:
      - main
    tags:
      - "v*"
  pull_request:
    branches:
      - main
  workflow_dispatch:

jobs:
  # Check that all files listed in manifest make it into build
  check-manifest:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - uses: actions/setup-python@v4
        with:
          python-version: "3.x"
      - run: pip install check-manifest && check-manifest
  
  # Check tests pass on multiple Python and OS combinations
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.9]
        os: [ubuntu-latest]

    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - uses: extractions/setup-just@v1
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
    - name: Install Conda Deps
      uses: conda-incubator/setup-miniconda@v2
      with:
        auto-update-conda: true
        python-version: ${{ matrix.python-version }}
        activate-environment: anaconda-client-env
        environment-file: ./environment.yml
    - name: Install Dependencies
      shell: bash -l {0}
      run: |
        python -m pip install --upgrade pip
        just install
    - name: Run Tests
      shell: bash -l {0}
      run: just test
    - name: Upload Codecov
      uses: codecov/codecov-action@v3

  # Check linting, formating, types, etc.
  lint:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: 3.9
    - uses: extractions/setup-just@v1
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
    - name: Install Dependencies
      run: |
        python -m pip install --upgrade pip
        pip install .[lint]
    - name: Lint
      run: just lint

  # Publish to PyPI if test, lint, and manifest checks passed
  publish:
    if: "success() && startsWith(github.ref, 'refs/tags/')"
    needs: [check-manifest, test, lint]
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Set up Python
      uses: actions/setup-python@v4
      with:
        python-version: 3.9
    - name: Install Dependencies
      run: |
        python -m pip install --upgrade pip
        pip install build wheel
    - name: Build Package
      run: |
        python -m build
    - name: Publish to PyPI
      uses: pypa/gh-action-pypi-publish@release/v1
      with:
        user: aicspypi
        password: ${{ secrets.PYPI_TOKEN }}