updated names of environment variables

simularium · Nov 1, 2023 · 22296f1 · 22296f1
1 parent 132f3e6
commit 22296f1
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/docker.sh b/docker.sh
@@ -4,15 +4,15 @@
 # Load input files 
 case ${SIMULATION_TYPE} in
 	AWS)
-		INPUT_FILE_PATH="${BATCH_JOB_URL}${FILE_SET_NAME}/config/"
-		OUTPUT_FILE_PATH="${BATCH_JOB_URL}${FILE_SET_NAME}/outputs/${AWS_BATCH_JOB_ARRAY_INDEX:-0}/"
+		INPUT_FILE_PATH="${BATCH_WORKING_URL}${FILE_SET_NAME}/config/"
+		OUTPUT_FILE_PATH="${BATCH_WORKING_URL}${FILE_SET_NAME}/outputs/${AWS_BATCH_JOB_ARRAY_INDEX:-0}/"
  		INPUT_FILE_NAME="${FILE_SET_NAME}_${AWS_BATCH_JOB_ARRAY_INDEX:-0}.cym" 
  		aws s3 cp $INPUT_FILE_PATH$INPUT_FILE_NAME config.cym
 	;;
 	LOCAL)
 		INPUT_FILE_PATH="/mnt/${SIMULATION_NAME}/config/"
 		OUTPUT_FILE_PATH="/mnt/${SIMULATION_NAME}/outputs/${JOB_ARRAY_INDEX}/"
- 		INgitPUT_FILE_NAME="${SIMULATION_NAME}_${JOB_ARRAY_INDEX}.cym" 
+ 		INPUT_FILE_NAME="${SIMULATION_NAME}_${JOB_ARRAY_INDEX}.cym" 
  		cp $INPUT_FILE_PATH$INPUT_FILE_NAME config.cym
 	;;
 esac