Add notebook in version 3

silx-kit · Mar 14, 2017 · 39035c4 · 39035c4
1 parent aa7398a
commit 39035c4
Show file tree

Hide file tree

Showing 15 changed files with 5,800 additions and 0 deletions.
diff --git a/silx/io/io.v3.ipynb b/silx/io/io.v3.ipynb
diff --git a/silx/plot/Plot1DExercise.v3.ipynb b/silx/plot/Plot1DExercise.v3.ipynb
@@ -0,0 +1,279 @@
+{
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.5.2"
+  },
+  "name": ""
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+  {
+   "cells": [
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "# One curve\n",
+      "## plot a simple curve and play with it\n",
+      "\n",
+      "- $x=[0, pi]$\n",
+      "\n",
+      "- $y=e^x$\n",
+      "\n",
+      "- see documentation: http://www.silx.org/doc/silx/dev/modules/gui/plot/plotwindow.html#silx.gui.plot.PlotWindow.Plot1D\n",
+      "\n",
+      "- see tutorial: http://www.silx.org/doc/silx/dev/modules/gui/plot/getting_started.html\n",
+      "\n",
+      "- use Plot1D and Plot1D.addCurve\n",
+      "    - legend is used as the ID of the curve. So if a new curve is setted with an existing id it will erase the first curve\n",
+      "\n",
+      "![larger-iso-surface-using-silx-plot3d](img/plot_exp.png)\n",
+      "\n",
+      "play with the interface:\n",
+      "- log scale\n",
+      "- grid\n",
+      "- display points\n",
+      "- ..."
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": true,
+     "input": [
+      "import numpy\n",
+      "from silx.gui.plot import Plot1D\n",
+      "%gui qt"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "import numpy\n",
+      "x=numpy.linspace(0, numpy.pi, 1000)\n",
+      "y=numpy.exp(x)"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "..."
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "## Shift the curve\n",
+      "get back the curve and add an offset in y axis\n",
+      "\n",
+      "- $y=y+100.0$\n",
+      "- get all needed data from the 'Plot1D' object\n",
+      "- use getCurve([curveID]) function. Return : \n",
+      "    - x\n",
+      "    - y\n",
+      "    - legend\n",
+      "    - info (if some informations has been added)\n",
+      "    - params (color, linewidth...)\n",
+      "\n",
+      "![shift exponential](img/plot1D_shiftCurveExp.png)"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "..."
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "heading",
+     "level": 1,
+     "metadata": {},
+     "source": [
+      "Many curves"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "## plot the following functionin the same plot window\n",
+      "- $y=sin(x)$\n",
+      "\n",
+      "- $y=cos(x)$\n",
+      "\n",
+      "- $y=x $\n",
+      "\n",
+      "- play with the curve selection from options->legend\n",
+      "\n",
+      "![plot_legends](img/plot_curves_legend.png)"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "..."
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "## remove one curve by the id\n",
+      "\n",
+      "- using the 'Plot1D' function 'remove([curveID])'"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": true,
+     "input": [
+      "..."
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "## shift curves by 30 in the x axis \n",
+      "- by using the functions of the 'Plot1D' object\n",
+      "    - getAllCurves\n",
+      "    - addCurve\n",
+      "- keep at least the color of the curve\n",
+      "- Result should be close to\n",
+      "\n",
+      "![plot1D_shiftcurves](img/plot1D_shiftCurves.png)"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "..."
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "# ROI\n"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "load data from data/spectrum.dat"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "import silx.io\n",
+      "sf = silx.io.open(\"data/spectrum.dat\")\n",
+      "x_data=sf['1.1/measurement/channel']\n",
+      "y_data=sf['1.1/measurement/counts']"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Plot the data"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": false,
+     "input": [
+      "plot=Plot1D()\n",
+      "x=numpy.linspace(0.0, numpy.pi)\n",
+      "y=numpy.sin(x)\n",
+      "plot.addCurve(x_data, y_data)\n",
+      "plot.setYAxisLogarithmic(True)\n",
+      "plot.show()"
+     ],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "options -> ROI -> add ROI -> select min and max limits.\n",
+      "estimate integral between lower and upper limits\n",
+      "    - Raw counts\n",
+      "![raw_counts](img/plot_ROI_raw_counts.png)\n",
+      "    - Net counts\n",
+      "![raw_counts](img/plot_ROI_net_counts.png)"
+     ]
+    },
+    {
+     "cell_type": "code",
+     "collapsed": true,
+     "input": [],
+     "language": "python",
+     "metadata": {},
+     "outputs": [],
+     "prompt_number": null
+    }
+   ],
+   "metadata": {}
+  }
+ ]
+}