Missing required file

[nslaven13]

Hey,

Wanted to run this pipeline with comparable combinatorial barcoding snRNA-seq (Sci-RNA-Seq3) but realized an input file is missing.

Script: Section_1_processing.R - line 17:

"mouse_gene = read.table("mouse.geneID.loc.txt", sep="\t", as.is=T)"

Missing file - mouse.geneID.loc.txt

I'm guessing this is quite a simple file with gene IDs and coordinates? Would you be able to upload it to perhaps the demo data folder? Or even email directly? (See email below)

Many thanks!

Neil Slaven
Postdoctoral Research Scholar
Mammalian Functional Genomics Lab
Lawrence Berkeley National Lab
([email protected])

[ChengxiangQiu]

Really sorry for that.
The data could be downloaded from the below link:
https://shendure-web.gs.washington.edu/content/members/MMCA/data/mouse.geneID.loc.txt
Please let me know if any questions!

[nslaven13]

No worries! Thanks for the fast response!