Popular repositories Loading

1. LACHESIS LACHESIS Public

   The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

   C++ 76 32

2. cfDNA cfDNA Public

   Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

   Python 63 30

3. MPRAflow MPRAflow Public

   A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

   Python 31 16

4. mouse-atac mouse-atac Public

   Repo for website and other code for mouse sci-ATAC-seq project

   Python 28 29

5. single-cell-ko-screens single-cell-ko-screens Public

   Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.

   R 26 10

6. MIPGEN MIPGEN Public

   One stop MIP design and analysis

   C++ 23 19