version 1.0.1

settylab · Nov 28, 2022 · df3e8f4 · df3e8f4
1 parent a88d305
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diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 5fdddfd33525765c7db7ddd967fa7073
+config: 225c9a164e3fe24ec1cb7a724896f15a
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_static/documentation_options.js b/docs/build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.0.0',
+    VERSION: '1.0.1',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/build/html/cov.html b/docs/build/html/cov.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Parameter Selection" href="parameters.html" /><link rel="prev" title="Utilities" href="util.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Covariance Functions - Mellon 1.0.0 documentation</title>
+        <title>Covariance Functions - Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
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@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="#" /><link rel="search" title="Search" href="search.html" />
 
-    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Index - Mellon 1.0.0 documentation</title>
+    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Index - Mellon 1.0.1 documentation</title>
 <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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@@ -121,7 +121,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -144,7 +144,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Model" href="model.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Mellon 1.0.0 documentation</title>
+        <title>Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="#"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="#"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="#">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">
@@ -214,6 +214,7 @@
 </div>
 <div class="toctree-wrapper compound">
 </div>
+<a class="reference external image-reference" href="https://zenodo.org/badge/latestdoi/558998366"><img alt="https://zenodo.org/badge/558998366.svg" src="https://zenodo.org/badge/558998366.svg" /></a>
 <p>Mellon is a non-parametric density estimator based on the NearestNeighbors distribution.</p>
 <section id="installation">
 <h1>Installation<a class="headerlink" href="#installation" title="Permalink to this heading">#</a></h1>

diff --git a/docs/build/html/inference.html b/docs/build/html/inference.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Basic Tutorial" href="notebooks/basic_tutorial.html" /><link rel="prev" title="Parameter Selection" href="parameters.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Inference - Mellon 1.0.0 documentation</title>
+        <title>Inference - Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
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@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/model.html b/docs/build/html/model.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Utilities" href="util.html" /><link rel="prev" title="Installation" href="index.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Model - Mellon 1.0.0 documentation</title>
+        <title>Model - Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/parameters.html b/docs/build/html/parameters.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Inference" href="inference.html" /><link rel="prev" title="Covariance Functions" href="cov.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Parameter Selection - Mellon 1.0.0 documentation</title>
+        <title>Parameter Selection - Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" />
 
-    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Python Module Index - Mellon 1.0.0 documentation</title>
+    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Python Module Index - Mellon 1.0.1 documentation</title>
 <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
@@ -121,7 +121,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -144,7 +144,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="#" />
 
-    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Search - Mellon 1.0.0 documentation</title><link rel="stylesheet" type="text/css" href="_static/pygments.css" />
+    <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/><title>Search - Mellon 1.0.1 documentation</title><link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
 
@@ -120,7 +120,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -143,7 +143,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="#" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/build/html/util.html b/docs/build/html/util.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Covariance Functions" href="cov.html" /><link rel="prev" title="Model" href="model.html" />
 
     <meta name="generator" content="sphinx-5.2.3, furo 2022.09.29"/>
-        <title>Utilities - Mellon 1.0.0 documentation</title>
+        <title>Utilities - Mellon 1.0.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?digest=d81277517bee4d6b0349d71bb2661d4890b5617c" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?digest=30d1aed668e5c3a91c3e3bf6a60b675221979f0e" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">Mellon 1.0.0 documentation</div></a>
+      <a href="index.html"><div class="brand">Mellon 1.0.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">Mellon 1.0.0 documentation</span>
+  <span class="sidebar-brand-text">Mellon 1.0.1 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder=Search name="q" aria-label="Search">

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -20,7 +20,7 @@
 author = 'Setty Lab'
 
 # The full version, including alpha/beta/rc tags
-release = '1.0.0'
+release = '1.0.1'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
     name="mellon",
-    version="1.0.0",
+    version="1.0.1",
     description="Non-parametric density estimator.",
     url="https://github.com/settylab/mellon",
     author="Setty Lab",