Refactor selection of Myers' bitparallel edit distance algorithm. #176
Workflow file for this run
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| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: CMake | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| types: | |
| - unlabeled | |
| workflow_dispatch: | |
| concurrency: | |
| group: cmake-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: ${{ github.event_name != 'push' }} | |
| env: | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Non-cyclic tests" | |
| compiler: "gcc-13" | |
| build: unit | |
| build_type: Debug | |
| use_include_dependencies: "ON" | |
| - name: "External project" | |
| compiler: "gcc-13" | |
| build: external_project | |
| build_type: Debug | |
| steps: | |
| - name: Checkout SeqAn3 | |
| uses: actions/checkout@v4 | |
| with: | |
| path: seqan3 | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Checkout SeqAn2 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: seqan/seqan | |
| path: seqan3/submodules/seqan | |
| fetch-depth: 1 | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Install CMake dependency | |
| if: matrix.build == 'external_project' | |
| run: | | |
| mkdir -p /tmp/libidn11-download | |
| wget --retry-connrefused --waitretry=30 --read-timeout=30 --timeout=30 --tries=20 --no-clobber --quiet --directory-prefix=/tmp/libidn11-download/ http://ftp.de.debian.org/debian/pool/main/libi/libidn/libidn11_1.33-3_amd64.deb | |
| sudo dpkg -i /tmp/libidn11-download/libidn11_1.33-3_amd64.deb | |
| - name: Setup compiler | |
| uses: seqan/actions/setup-compiler@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| - name: Configure tests | |
| run: | | |
| mkdir seqan3-build | |
| cd seqan3-build | |
| cmake ../seqan3/test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}" \ | |
| -DSEQAN3_VERBOSE_TESTS=OFF \ | |
| -DSEQAN3_USE_INCLUDE_DEPENDENCIES="${{ matrix.use_include_dependencies }}" | |
| case "${{ matrix.build }}" in | |
| unit) make -j${{ matrix.build_threads }} gtest_build;; | |
| external_project) make -j${{ matrix.build_threads }} seqan3_test_prerequisite sharg_test_prerequisite;; | |
| esac | |
| - name: Build tests | |
| run: | | |
| cd seqan3-build | |
| case "${{ matrix.build }}" in | |
| unit) make -k -j2 all_dependencies; cmake .;; | |
| external_project) make -k -j1;; | |
| esac | |