[INFRA] Fix sanitizer

.github/workflows/ci_macos.yml

@@ -24,7 +24,7 @@ defaults:
 jobs:
   build:
     name: ${{ matrix.compiler }}
-    runs-on: macos-12
+    runs-on: macos-14
     if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint'
     strategy:
       fail-fast: false
@@ -46,10 +46,11 @@ jobs:
           compiler: ${{ matrix.compiler }}
           ccache_size: 75M
 
-      - name: Install CMake
-        uses: seqan/actions/setup-cmake@main
+      - name: Patch M1 GCC
+        if: contains(matrix.compiler, 'gcc') && matrix.compiler != 'gcc-14'
+        uses: seqan/actions/patch-m1-gcc@main
         with:
-          cmake: 3.28.5
+          compiler: ${{ matrix.compiler }}
 
       - name: Configure tests
         run: |

.github/workflows/ci_sanitizer.yml

@@ -11,7 +11,6 @@ concurrency:
 
 env:
   TZ: Europe/Berlin
-  ASAN_OPTIONS: strict_string_checks=1:detect_stack_use_after_return=1:check_initialization_order=1:strict_init_order=1:detect_leaks=1
   TSAN_OPTIONS: ignore_noninstrumented_modules=1
   UBSAN_OPTIONS: print_stacktrace=1
 
@@ -24,22 +23,24 @@ jobs:
     name: ${{ matrix.name }} ${{ matrix.build_type }} ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
+    env:
+      ASAN_OPTIONS: strict_string_checks=1:detect_stack_use_after_return=1:check_initialization_order=1:strict_init_order=1:detect_leaks=${{ contains(matrix.os, 'macos') && '0' || '1' }}
     strategy:
       fail-fast: false
       matrix:
         name: [ASan, TSan, UBSan]
-        os: [ubuntu-latest, macos-12]
+        os: [ubuntu-latest, macos-14]
         build_type: [Release, RelWithDebInfo, Debug]
         exclude:
           - name: "TSan"
-            os: macos-12
+            os: macos-14
         include:
           - name: "ASan"
             os: ubuntu-latest
             cxx_flags: "-fno-omit-frame-pointer -fsanitize=address -Wno-maybe-uninitialized -Wno-interference-size"
 
           - name: "ASan"
-            os: macos-12
+            os: macos-14
             cxx_flags: "-fno-omit-frame-pointer -fsanitize=address"
 
           - name: "TSan"
@@ -50,10 +51,10 @@ jobs:
             cxx_flags: "-fno-omit-frame-pointer -fsanitize=undefined,float-divide-by-zero -Wno-interference-size"
 
           - name: "UBSan"
-            os: macos-12
+            os: macos-14
             cxx_flags: "-fno-omit-frame-pointer -fsanitize=undefined,float-divide-by-zero,local-bounds,nullability -fno-sanitize=function -Wno-pass-failed"
 
-          - os: macos-12
+          - os: macos-14
             compiler: clang-18
 
           - os: ubuntu-latest
@@ -78,6 +79,12 @@ jobs:
         with:
           compiler: ${{ matrix.compiler }}
 
+      - name: Patch M1 GCC
+        if: contains(matrix.compiler, 'gcc') && matrix.compiler != 'gcc-14'
+        uses: seqan/actions/patch-m1-gcc@main
+        with:
+          compiler: ${{ matrix.compiler }}
+
       - name: Configure tests
         run: |
           mkdir build && cd build

cmake/package-lock.cmake

@@ -6,7 +6,7 @@
 # This file should be committed to version control
 
 # hibf
-set (CHOPPER_HIBF_VERSION 169cafe1fda30f2b0546cababd5740b282c38aa6)
+set (CHOPPER_HIBF_VERSION f85154de1db3d6430db63e16193b87c7bed70b8d)
 CPMDeclarePackage (hibf
                    NAME hibf
                    GIT_TAG ${CHOPPER_HIBF_VERSION}
@@ -16,7 +16,7 @@ CPMDeclarePackage (hibf
                    OPTIONS "INSTALL_HIBF OFF"
 )
 # sharg
-set (CHOPPER_SHARG_VERSION 420193a9642ab34c87c21a8b9ba1dd3e23d2c83a)
+set (CHOPPER_SHARG_VERSION c4367d1049322826e60c674b6bf24d3d0a8da999)
 CPMDeclarePackage (sharg
                    NAME sharg
                    GIT_TAG ${CHOPPER_SHARG_VERSION}
@@ -26,7 +26,7 @@ CPMDeclarePackage (sharg
                    OPTIONS "INSTALL_SHARG OFF" "INSTALL_TDL OFF" "CMAKE_MESSAGE_LOG_LEVEL WARNING" "BUILD_TESTING OFF"
 )
 # seqan3
-set (CHOPPER_SEQAN3_VERSION 1fcf9a66a5db46785dc90bc2d1fc6b4acca94fd9)
+set (CHOPPER_SEQAN3_VERSION d4a7c88fde0311e12e98e7822da772b99c887cb5)
 CPMDeclarePackage (seqan3
                    NAME seqan3
                    GIT_TAG ${CHOPPER_SEQAN3_VERSION}