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[MISC] Use new layout #197
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Codecov ReportPatch coverage:
Additional details and impacted files@@ Coverage Diff @@
## main #197 +/- ##
==========================================
- Coverage 95.66% 95.58% -0.09%
==========================================
Files 13 13
Lines 646 634 -12
==========================================
- Hits 618 606 -12
Misses 28 28
☔ View full report in Codecov by Sentry. |
include/chopper/configuration.hpp
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@@ -86,7 +86,7 @@ struct configuration | |||
archive(CEREAL_NVP(determine_best_tmax)); | |||
archive(CEREAL_NVP(force_all_binnings)); | |||
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archive(CEREAL_NVP(hibf_config)); | |||
// archive(CEREAL_NVP(hibf_config)); |
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// archive(CEREAL_NVP(hibf_config)); |
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can be done in a follow up pr
I'm not sure what exactly you mean by all the open todo points. Maybe we should discuss them before merging this PR. |
@@ -17,6 +17,7 @@ | |||
#include <seqan3/utility/range/to.hpp> | |||
#include <seqan3/utility/views/join_with.hpp> | |||
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#include "../api/api_test.hpp" | |||
#include "cli_test.hpp" | |||
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// check if each chopper submodule can work with the output of the other |
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chopper_layout_with_tax
// tax is ignored
With TAX, otherwise same as chopper_layout2
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return filenames; | ||
} | ||
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Add read_layout_file
include/chopper/layout/input.hpp
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namespace chopper::layout | ||
{ | ||
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inline void read_config_from(configuration & config, std::istream & stream) |
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As member
TODO:
chopper::configuration::write_to { // Call cereal on members }
write_to
/read_from
same as in hibf lib