[INFRA] Update HIBF submodule

seqan · Aug 30, 2023 · 8a59f0e · 8a59f0e
1 parent c26f06f
commit 8a59f0e
Show file tree

Hide file tree

Showing 12 changed files with 14 additions and 14 deletions.
diff --git a/include/chopper/configuration.hpp b/include/chopper/configuration.hpp
@@ -17,8 +17,8 @@
 
 #include <chopper/prefixes.hpp>
 
+#include <hibf/cereal/path.hpp> // IWYU pragma: keep
 #include <hibf/config.hpp>
-#include <hibf/detail/cereal/path.hpp> // IWYU pragma: keep
 
 namespace chopper
 {

diff --git a/include/chopper/layout/hibf_statistics.hpp b/include/chopper/layout/hibf_statistics.hpp
@@ -20,9 +20,9 @@
 #include <chopper/next_multiple_of_64.hpp>
 #include <chopper/workarounds.hpp>
 
-#include <hibf/detail/layout/compute_fpr_correction.hpp>
-#include <hibf/detail/layout/layout.hpp>
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/layout/compute_fpr_correction.hpp>
+#include <hibf/layout/layout.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 namespace std
 {

diff --git a/include/chopper/layout/input.hpp b/include/chopper/layout/input.hpp
@@ -16,7 +16,7 @@
 #include <chopper/configuration.hpp>
 #include <chopper/prefixes.hpp>
 
-#include <hibf/detail/layout/layout.hpp>
+#include <hibf/layout/layout.hpp>
 
 namespace chopper::layout
 {

diff --git a/include/chopper/layout/output.hpp b/include/chopper/layout/output.hpp
@@ -12,7 +12,7 @@
 #include <chopper/configuration.hpp>
 #include <chopper/prefixes.hpp>
 
-#include <hibf/detail/layout/layout.hpp>
+#include <hibf/layout/layout.hpp>
 
 namespace chopper::layout
 {

diff --git a/include/chopper/prefixes.hpp b/include/chopper/prefixes.hpp
@@ -9,7 +9,7 @@
 
 #include <string_view>
 
-#include <hibf/detail/prefixes.hpp>
+#include <hibf/layout/prefixes.hpp>
 
 namespace chopper::prefix
 {

diff --git a/include/chopper/sketch/output.hpp b/include/chopper/sketch/output.hpp
@@ -15,7 +15,7 @@
 
 #include <chopper/configuration.hpp>
 
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 namespace chopper::sketch
 {

diff --git a/include/chopper/sketch/read_hll_files_into.hpp b/include/chopper/sketch/read_hll_files_into.hpp
@@ -13,7 +13,7 @@
 #include <string>
 #include <vector>
 
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 namespace chopper::sketch
 {

diff --git a/lib/Hierarchical_Interleaved_Bloomfilter b/lib/Hierarchical_Interleaved_Bloomfilter
diff --git a/src/chopper_layout.cpp b/src/chopper_layout.cpp
@@ -17,8 +17,8 @@
 #include <chopper/layout/output.hpp>
 #include <chopper/sketch/output.hpp>
 
-#include <hibf/detail/layout/compute_layout.hpp>
 #include <hibf/hierarchical_interleaved_bloom_filter.hpp>
+#include <hibf/layout/compute_layout.hpp>
 
 namespace chopper::layout
 {

diff --git a/src/display_layout.cpp b/src/display_layout.cpp
@@ -20,7 +20,7 @@
 #include <chopper/layout/hibf_statistics.hpp>
 #include <chopper/layout/input.hpp>
 
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 struct config
 {

diff --git a/src/measure_hyperloglog.cpp b/src/measure_hyperloglog.cpp
@@ -19,7 +19,7 @@
 #include <seqan3/search/kmer_index/shape.hpp>
 #include <seqan3/search/views/kmer_hash.hpp>
 
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 struct cli_args
 {

diff --git a/test/api/layout/execute_with_estimation_test.cpp b/test/api/layout/execute_with_estimation_test.cpp
@@ -18,7 +18,7 @@
 #include <chopper/sketch/read_hll_files_into.hpp>
 
 #include "../api_test.hpp"
-#include <hibf/detail/sketch/hyperloglog.hpp>
+#include <hibf/sketch/hyperloglog.hpp>
 
 TEST(execute_estimation_test, few_ubs)
 {