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BIOS2: Biostatistics 621 / 821

R Markdown and .ipynb source code for Levi Waldron's Biostatistics II lectures and labs is maintained at https://github.com/waldronlab/bios2.

Jupyter Notebooks are also available at https://notebooks.azure.com/LeviWaldron56/libraries/bios2.

Conversion of Rmd to ipynb

Here is the shell script I use to convert Rmd files to ipynb. It relies on notedown, which can be installed by pip install notedown.

#!/bin/bash
oldfile=$1
newfile="$(basename "$oldfile" .Rmd).ipynb"
echo Creating "$newfile" from "$oldfile"
notedown $oldfile | grep -v '%%R' > $newfile

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