Skip to content

Commit

Permalink
Update paper.md
Browse files Browse the repository at this point in the history
  • Loading branch information
sdwfrost authored Jul 29, 2016
1 parent 6880728 commit 780d165
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion paper/paper.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,6 @@ bibliography: paper.bib

# Summary

`Gillespie.jl` [@GillespieJL] is a Julia package for stochastic simulation using Gillespie's direct method (sometimes called the Doob-Gillespie algorithm) [@Doob1945;@Gillespie1977] for performing stochastic simulations, an approach widely used in many fields, including systems biology and epidemiology. It borrows the basic interface (although none of the code) from the R library `GillespieSSA` by Mario Pineda-Krch [@Pineda-Krch2008], although `Gillespie.jl` only implements the standard exact method at present, whereas `GillespieSSA` also includes other methods, such as tau-leaping, *etc.*. `Gillespie.jl` is intended to offer performance on par with hand-coded C code, while maintaining a simple but flexible interface.
`Gillespie.jl` [@GillespieJL] is a Julia package for stochastic simulation using Gillespie's direct method (sometimes called the Doob-Gillespie algorithm) [@Doob1945;@Gillespie1977], an approach widely used in many fields, including systems biology and epidemiology. It borrows the basic interface (although none of the code) from the R library `GillespieSSA` by Mario Pineda-Krch [@Pineda-Krch2008], although `Gillespie.jl` only implements the standard exact method at present, whereas `GillespieSSA` also includes other methods, such as tau-leaping, *etc.*. `Gillespie.jl` is intended to offer performance on par with hand-coded C code, while maintaining a simple but flexible interface.

# References

0 comments on commit 780d165

Please sign in to comment.