v0.2.6

[0.2.6] - 2024-11-26

Added

• Added set_channel_names method to SpatialData to change the channel names of an
  image element in SpatialData #786
• Added write_channel_names method to SpatialData to overwrite channel metadata on disk
  without overwriting the image array itself. #786

Changed

• Argument c_coords is moved out of kwargs for the ImageModels. #779
• get_channels is marked for deprecation in SpatialData v0.3.0. Function is replaced
  by get_channel_names #786
• Updated dependency of multiscale-spatial-image #792
• Adjust to new version of xarray with DataTree # 752

Fixed

• Updated deprecated default stages of pre-commit #771
• Preserve points feature_key during queries #794

v0.2.6-pre0

fix CHANGELOG.md

v0.2.5post0

Fixed broken documentation (a release was made from a machine with an older version of the spatialdata-notebook submodule)

v0.2.5

[0.2.5] - 2024-11-06

Fixed

• Incompatibility issues due to newest release of multiscale-spatial-image #760

v0.2.4

[0.2.4] - 2024-11-06

Major

• Enable vectorization of bounding_box_query for all SpatialData elements. #699

Minor

• Added shortest_path parameter to get_transformation_between_coordinate_systems #714
• Added get_pyramid_levels() utils API #719
• Improved ergonomics of concatenate() when element names are non-unique #720
• Improved performance of writing images with multiscales #577

v0.2.3

[0.2.3] - 2024-09-25

Minor

• Added clip: bool = False parameter to polygon_query() #670
• Add sort parameter to PointsModel.parse() #672

Fixed

• Fix interpolation artifact multiscale computation for labels #697

v0.2.2

[0.2.2] - 2024-08-07

Major

• New disk format for shapes using GeoParquet (the change is backward compatible) #542

Minor

• Add return_background as argument to get_centroids and get_element_instances #621
• Ability to save data using older disk formats #542

Fixed

• Circles validation now checks for inf or nan radii #653
• Bug with table name in torch dataset #654 @LLehner

v0.2.1

[0.2.1] - 2024-07-04

Minor

• Relaxing spatial-image package requirement #616

v0.2.0

[0.2.0] - 2024-07-03

Changed

• Using DataArray directly instead of the subclass SpatialImage (removed install constraint for the spatial_image package) #587
• Using DataTree directly instead of the subclass MultiscaleSpatialImage (removed install constraint for the multiscale_spatial_image package) #587

Major

• Added operation: to_polygons() @quentinblampey #560
• Extended rasterize() to support all the data types @quentinblampey #566
• Added operation: rasterize_bins() @quentinblampey #578
• Added operation: map_raster() to apply functions block-wise to raster data @ArneDefauw #588

Minor

• Removed pygeos dependency @omsai #545
• Channel coordinate annotations on images now persist through rasterize() @clwgg #544
• Added datasets module
• Extended get_values() to AnnData tables #579
• Added get_element_instances() (replaces _get_unique_label_values_as_index()) #582
• Added get_element_annotators(), retrieving the tables that annotate a particular SpatialElement #595

Fixed

• Preserve channel names of multi-scale images in transform (#379)

v0.2.0rc1

Update pyproject.toml