Fix parameters

scverse · Aug 20, 2023 · edca0d9 · edca0d9
1 parent e256b0b
commit edca0d9
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/src/spatialdata_io/readers/stereoseq.py b/src/spatialdata_io/readers/stereoseq.py
@@ -28,7 +28,7 @@
 
 def stereoseq(
     path: str | Path,
-    dataset_id: str | None,
+    dataset_id: str = None,
     imread_kwargs: Mapping[str, Any] = MappingProxyType({}),
     image_models_kwargs: Mapping[str, Any] = MappingProxyType({}),
 ) -> SpatialData:
@@ -60,7 +60,7 @@ def stereoseq(
 
         if gef_files:
             first_gef_file = gef_files[0]
-            dataset_id = first_gef_file.split(".")[0]
+            dataset_id = first_gef_file.split('.')[0]
 
     image_patterns = [
         re.compile(r".*" + re.escape(StereoseqKeys.MASK_TIF)),
@@ -155,12 +155,12 @@ def stereoseq(
 
     # add all leftover columns in cellbin which don't fit .obs or .var to uns
     cellbin_uns = {
-        "geneID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.GENE_ID][:],
+        "geneID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.GENE_ID][:], 
         "cellExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.COUNT][:],
-        "cellExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP_EXON][:],
-        "cellID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.CELL_ID][:],
-        "geneExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.COUNT][:],
-        "geneExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP_EXON][:],
+        "cellExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP_EXON][:], 
+        "cellID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.CELL_ID][:], 
+        "geneExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.COUNT][:], 
+        "geneExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP_EXON][:], 
     }
     cellbin_uns_df = pd.DataFrame(cellbin_uns)