update hatch #185
Workflow file for this run
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name: GPU-CI-DEV | |
on: | |
push: | |
branches: [main] | |
pull_request: | |
types: | |
- labeled | |
- opened | |
- synchronize | |
# Cancel the job if new commits are pushed | |
# https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
check: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: flying-sheep/check@v1 | |
with: | |
success: ${{ github.event_name == 'push' || contains(github.event.pull_request.labels.*.name, 'run-gpu-ci') }} | |
test: | |
name: GPU Tests | |
needs: check | |
runs-on: "cirun-aws-gpu--${{ github.run_id }}" | |
timeout-minutes: 30 | |
defaults: | |
run: | |
shell: bash -el {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Nvidia SMI sanity check | |
run: nvidia-smi | |
- name: Install Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.12" | |
- name: Install UV | |
uses: hynek/setup-cached-uv@v2 | |
with: | |
cache-dependency-path: pyproject.toml | |
- name: Install rapids-singlecell | |
run: >- | |
uv pip install --system -e .[test,rapids12] | |
"scanpy @ git+https://github.com/scverse/scanpy.git" | |
"anndata @ git+https://github.com/scverse/anndata.git" | |
--extra-index-url=https://pypi.nvidia.com | |
--index-strategy unsafe-best-match | |
- name: Run test | |
run: pytest |