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chore: update reading support for RNTuple v1 #4176

chore: update reading support for RNTuple v1

chore: update reading support for RNTuple v1 #4176

Workflow file for this run

name: Test build
on:
workflow_dispatch:
pull_request:
push:
branches: [main]
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
strategy:
fail-fast: false
matrix:
platform: [windows-latest, macos-latest, ubuntu-latest]
python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
runs-on: ${{ matrix.platform }}
timeout-minutes: 30
# Required for miniconda to activate conda
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Get conda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
miniforge-version: latest
use-mamba: true
- name: Check active Python version
run: python -c "import sys; assert '.'.join(str(s) for s in sys.version_info[:2]) == '${{ matrix.python-version }}', f'{version} incorrect!'"
- name: Install ROOT
if: matrix.python-version == 3.9 && runner.os != 'macOS' && runner.os != 'Windows'
run: |
conda env list
mamba install root
conda list
- name: Install sshd for fsspec ssh tests
if: runner.os != 'macOS' && runner.os != 'Windows'
run: |
sudo apt-get install -y openssh-server
sudo service ssh restart
ssh-keygen -t rsa -N "" -f ~/.ssh/id_rsa
cat ~/.ssh/id_rsa.pub >> ~/.ssh/authorized_keys
chmod og-wx ~/.ssh/authorized_keys
ssh-keyscan -H localhost >> ~/.ssh/known_hosts
ssh -o StrictHostKeyChecking=no localhost echo "ssh connection successful"
- name: Install XRootD
if: runner.os != 'macOS' && runner.os != 'Windows'
run: |
conda env list
mamba install xrootd
conda list
- name: Pip install the package
run: python -m pip install .[test,dev]
- name: Run pytest
run: |
python -m pytest -vv tests --reruns 10 --reruns-delay 30 --only-rerun "(?i)http|ssl|timeout|expired|connection|socket"
vanilla-build:
strategy:
fail-fast: false
matrix:
platform: [windows-latest, ubuntu-latest, macos-latest]
python-version: ['3.13']
runs-on: ${{ matrix.platform }}
timeout-minutes: 30
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
allow-prereleases: true
- uses: astral-sh/setup-uv@v3
- name: Pip install the package
run: uv pip install --system .[test,dev]
- name: Run pytest
run: |
python -m pytest -vv tests --reruns 10 --reruns-delay 30 --only-rerun "(?i)http|ssl|timeout|expired|connection|socket"
numpy1-build:
strategy:
fail-fast: false
matrix:
platform: [windows-latest, ubuntu-latest, macos-latest]
python-version: ['3.11']
runs-on: ${{ matrix.platform }}
timeout-minutes: 30
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Pip install the package
run: python -m pip install 'numpy<2' .[test]
- name: Run pytest
run: |
python -m pytest -vv tests --reruns 10 --reruns-delay 30 --only-rerun "(?i)http|ssl|timeout|expired|connection|socket"
pyodide-build:
runs-on: ubuntu-latest
timeout-minutes: 30
env:
PYODIDE_VERSION: 0.26.2
PYODIDE_BUILD_VERSION: 0.28.0
AWKWARD_VERSION: v2.6.4
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install pyodide-build
run: python3 -m pip install pyodide-build==$PYODIDE_BUILD_VERSION
- name: Determine EMSDK version
id: compute-emsdk-version
run: |
pyodide config list
# Save EMSDK version
EMSCRIPTEN_VERSION=$(pyodide config get emscripten_version)
echo "emsdk-version=$EMSCRIPTEN_VERSION" >> $GITHUB_OUTPUT
- name: Install EMSDK
uses: mymindstorm/setup-emsdk@v14
with:
version: ${{ steps.compute-emsdk-version.outputs.emsdk-version }}
- name: Build the package
run: pyodide build
- name: Build an awkward wheel compatible with the awkward-cpp version in pyodide
run: |
git clone --depth 1 --branch $AWKWARD_VERSION https://github.com/scikit-hep/awkward.git dependencies/awkward
pyodide build dependencies/awkward
rm -rf dependencies/
- name: Download Pyodide
uses: pyodide/pyodide-actions/download-pyodide@v2
with:
version: ${{ env.PYODIDE_VERSION }}
to: pyodide-dist
- name: Install browser
uses: pyodide/pyodide-actions/install-browser@v2
with:
runner: selenium
browser: chrome
browser-version: latest
github-token: ${{ secrets.GITHUB_TOKEN }}
- name: Install dependencies
run: pip install .[test-pyodide] pyodide-py==$PYODIDE_VERSION
- name: Run pytest
run: |
pytest -vv --dist-dir=./pyodide-dist/ --runner=selenium --runtime=chrome tests-wasm
pass:
if: always()
needs: [build, vanilla-build, numpy1-build, pyodide-build]
runs-on: ubuntu-latest
timeout-minutes: 2
steps:
- name: Decide whether the needed jobs succeeded or failed
uses: re-actors/alls-green@release/v1
with:
jobs: ${{ toJSON(needs) }}