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Bit more info in comments
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KatyTaylor committed Nov 17, 2022
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6 changes: 6 additions & 0 deletions queries/TAT-WOW-project/DBS/find_dbs_samples.sql
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Expand Up @@ -22,8 +22,14 @@ SELECT DISTINCT s.id AS ewh_sample_id,
JOIN mlwhd_mlwarehouse_proddata.sample mlwh_sample ON mlwh_sample.uuid_sample_lims = gbs_samples.sample_uuid
JOIN mlwhd_mlwarehouse_proddata.iseq_flowcell iseq_flowcell USING (id_sample_tmp)

-- Beware! If a new primer panel is used in the lab, this list will need to be updated.
WHERE iseq_flowcell.primer_panel IN ('PFA_GRC1_v1.0', 'PFA_GRC2_v1.0', 'PFA_Spec', 'PVIV_GRC_1.0')
;
-- 4,301
-- most recent vivax ones are from Feb 2021 - is this expected?
-- SSR says "we get so few samples for vivax they are waiting a while. The panel is still good and used."
-- To find primer panel values, you can:
-- go to the bulk submission page in Sequencescape UI
-- select "Limber-Htp - GBS" as the submission template
-- look at the values in the 'primer panel' dropdown
-- an SSR can tell you which ones in the list are relevant

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