Code

Template update#8

Code

Merged

muffato merged 32 commits intodevsanger-tol/sequencecomposition:devfrom template_updatesanger-tol/sequencecomposition:template_updateCopy head branch name to clipboardAug 11, 2023

+897-403

Commits

Commits on Sep 12, 2022

• initial template build from nf-core/tools, version 2.5

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  972cd85

Commits on Jul 11, 2023

• Template update for nf-core/tools version 2.6

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  c998e1a

Commits on Jul 12, 2023

• Merge branch 'TEMPLATE' into dev

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  a6af3d3

• Corrected the pipeline name

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  4029d4b

• Manual fixes

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  56f497f

• Template update for nf-core/tools version 2.7

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  d732cf0

• Template update for nf-core/tools version 2.8

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  56f3fed

• Merge branch 'TEMPLATE' into dev

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  ca10727

• Merge branch 'TEMPLATE' into dev

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  a82485a

• nf-core lint

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  7951f68

• Fixed the path of the modules

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  329795e

• New logo

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  2253a5f

• I don't want to enforce cleanup=true here

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  ea829de

• [linting] Applied black

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• [linting] Applied prettier

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• Merge branch 'TEMPLATE' into dev

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  f8ae514

• Exclude .cff files from EditorConfig

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  16dce3d

Commits on Jul 15, 2023

• Fixed the example params.yaml

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  e4dd15f

• Put these back at their original location

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  e51bebb

Commits on Jul 31, 2023

• The template was erroneously hardcoding sanger-tol/readmapping

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  55690e8

• Added a redirection notice to the pipeline website

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• The convention is now to put all the pipeline_info files in per-pipeline sub-directories

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  5cc91c7

Commits on Aug 4, 2023

• Updated the DOI

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  dcf1c1f

• Fixed the README

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  2f17c83

• Should default to "results" for consistency

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  657ebcc

• Added the farm tests (through Tower)

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  27404b2

• Reduced samplesheet that should take less space

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  9d6d4ea

• Only download specific assemblies

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• Added back GITHUB_WORKSPACE

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Commits on Aug 10, 2023

• Latest nomenclature

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  19d9743

• Added the code of conduct

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• Fixed the CHANGELOG

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  d865d02