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Reorganise subworkflow execution #63

Closed
priyanka-surana opened this issue Mar 16, 2023 · 0 comments · Fixed by #91
Closed

Reorganise subworkflow execution #63

priyanka-surana opened this issue Mar 16, 2023 · 0 comments · Fixed by #91
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@muffato
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maintain Tasks to keep pipelines up to date
Milestone
1.3.0

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@priyanka-surana
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Description of feature

To close this issue:

  1. Remove covert_stats from the subworkflow to workflow
  2. Remove samtools_view from convert_stats to workflow
  3. Rename convert_stats to alignment_statistics
  4. Run tests to make sure the output is still consistent
@priyanka-surana priyanka-surana added the enhancement Improvement of the existing features label Mar 16, 2023
@priyanka-surana priyanka-surana added this to the 1.2.0 milestone Mar 16, 2023
@priyanka-surana priyanka-surana self-assigned this Mar 16, 2023
@priyanka-surana priyanka-surana pinned this issue Mar 16, 2023
@priyanka-surana priyanka-surana added the maintain Tasks to keep pipelines up to date label Jun 27, 2023
@priyanka-surana priyanka-surana linked a pull request Jul 11, 2023 that will close this issue
Add read group back and crumble for HiFi #68
Merged
@muffato muffato removed a link to a pull request Dec 8, 2023
Add read group back and crumble for HiFi #68
Merged
@muffato muffato removed this from the 1.2.0 milestone Dec 8, 2023
@muffato muffato mentioned this issue Dec 8, 2023
Merged
9 tasks
@muffato muffato added this to the 1.3.0 milestone Feb 12, 2024
@muffato muffato removed the enhancement Improvement of the existing features label Jun 1, 2024
@muffato muffato moved this from Todo to In Progress in Genome After Party Jun 1, 2024
@muffato muffato self-assigned this Jun 1, 2024
@muffato muffato moved this to To do in readmapping Jun 5, 2024
@muffato muffato moved this from In Progress to Todo in Genome After Party Jun 24, 2024
@muffato muffato removed this from the 1.3.0 milestone Jun 24, 2024
@muffato muffato linked a pull request Aug 22, 2024 that will close this issue
Pipes #91
Merged
9 tasks
@muffato muffato closed this as completed Aug 22, 2024
@github-project-automation github-project-automation bot moved this from Todo to Done in Genome After Party Aug 22, 2024
@github-project-automation github-project-automation bot moved this from To do to Done in readmapping Aug 22, 2024
@muffato muffato added this to the 1.3.0 milestone Aug 22, 2024
@muffato muffato unpinned this issue Aug 22, 2024
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Assignees

@muffato muffato

Labels
maintain Tasks to keep pipelines up to date
Projects
Genome After Party
Status: Done
readmapping
Status: Done
Milestone
1.3.0
Development

Successfully merging a pull request may close this issue.

Pipes sanger-tol/readmapping
2 participants
@muffato @priyanka-surana