quay.io/ is now the default

sanger-tol · Dec 7, 2023 · 4094724 · 4094724
1 parent c15d923
commit 4094724
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/modules/local/pacbio_filter.nf b/modules/local/pacbio_filter.nf
@@ -5,7 +5,7 @@ process PACBIO_FILTER {
     conda "conda-forge::gawk=5.1.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/gawk:5.1.0' :
-        'quay.io/biocontainers/gawk:5.1.0' }"
+        'biocontainers/gawk:5.1.0' }"
 
     input:
     tuple val(meta), path(txt)

diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
@@ -5,7 +5,7 @@ process SAMPLESHEET_CHECK {
     conda "conda-forge::python=3.8.3"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/python:3.8.3' :
-        'quay.io/biocontainers/python:3.8.3' }"
+        'biocontainers/python:3.8.3' }"
 
     input:
     path samplesheet

diff --git a/modules/local/samtools_sormadup.nf b/modules/local/samtools_sormadup.nf
@@ -7,7 +7,7 @@ process SAMTOOLS_SORMADUP {
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
-        'quay.io/biocontainers/samtools:1.17--h00cdaf9_0' }"
+        'biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(input)

diff --git a/modules/local/unmask.nf b/modules/local/unmask.nf
@@ -5,7 +5,7 @@ process UNMASK {
     conda "conda-forge::gawk=5.1.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/gawk:5.1.0' :
-        'quay.io/biocontainers/gawk:5.1.0' }"
+        'biocontainers/gawk:5.1.0' }"
 
     input:
     tuple val(meta), path(fasta)