streamline prep for samtools_view call

sanger-tol · Jul 12, 2024 · 15e8d7b · 15e8d7b
1 parent ca86a50
commit 15e8d7b
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/subworkflows/local/convert_stats.nf b/subworkflows/local/convert_stats.nf
@@ -33,10 +33,8 @@ workflow CONVERT_STATS {
 
     // Convert BAM to CRAM
     CRUMBLE.out.bam
+    | mix ( ch_bams.no_crumble )
     | map { meta, bam -> [meta, bam, []] }
-    | mix ( ch_bams.no_crumble.map{
-        meta, bam -> [meta, bam, []] }
-    )
     | set { ch_bams_for_conversion }
 
     SAMTOOLS_VIEW ( ch_bams_for_conversion, fasta, [] )