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merge bwamem_index and remove unneeded multiqc options #203

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merge bwamem_index and remove unneeded multiqc options

merge bwamem_index and remove unneeded multiqc options #203

Run time

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Job Run time
Run pipeline with test data (22.10.1)
4m 40s
Run pipeline with test data (latest-everything)
4m 23s
9m 3s