test: Check updated subwf content

sanger-tol · Dec 2, 2024 · c7b7567 · c7b7567
1 parent 17dca8d
commit c7b7567
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/tests/subworkflows/test_update.py b/tests/subworkflows/test_update.py
@@ -386,11 +386,18 @@ def test_update_subworkflow_across_orgs(self):
         # The fastq_trim_fastp_fastqc subworkflow contains the cross-org fastqc module, not the nf-core one
         install_obj.install("fastq_trim_fastp_fastqc")
 
+        patch_path = Path(self.pipeline_dir, "fastq_trim_fastp_fastqc.patch")
         update_obj = SubworkflowUpdate(
             self.pipeline_dir,
             remote_url=CROSS_ORGANIZATION_URL,
+            save_diff_fn=patch_path,
             update_all=False,
             update_deps=True,
             show_diff=False,
         )
         assert update_obj.update("fastq_trim_fastp_fastqc") is True
+
+        with open(patch_path) as fh:
+            content = fh.read()
+            assert "-        fastqc_raw_html = FASTQC_RAW.out.html" in content
+            assert "+        ch_fastqc_raw_html = FASTQC_RAW.out.html" in content