Code

Formatting custom SAM header#21

Code

Merged

tkchafin merged 17 commits intodevsanger-tol/insdcdownload:devfrom samtools_reheadersanger-tol/insdcdownload:samtools_reheaderCopy head branch name to clipboardJul 5, 2024

+175-10

Commits

Commits on Jun 25, 2024

• download_genome.nf now emits assembly report

  tkchafin

  committed
  4f73bfd

• ncbi_download now emits ftp source and saves to outdir

  tkchafin

  committed
  bcd4275

• added local module to build custom sam header

  tkchafin

  committed
  1d73f58

Commits on Jun 26, 2024

• added subworkflow to build ENA-compliant custom SAM header

  tkchafin

  committed
  12ee6a8

• fix minor typos

  tkchafin

  committed
  822760d

• Merge pull request #20 from tkchafin/samtools_reheader

  Show description for 2bea0fc
  tkchafin

  authored
  2bea0fc

Commits on Jun 27, 2024

• Update modules/local/build_sam_header.nf

  Show description for 2a19a8e
  

  tkchafin

  and

  muffato

  authored
  2a19a8e

• fix error in @sq lines (AM -> AN)

  tkchafin

  authored
  9195817

• write full path to SOURCE

  tkchafin

  authored
  bba6378

• remove publishing of intermediate .dict file

  tkchafin

  authored
  096ae1c

• remove redundant second PREPARE_HEADER call

  tkchafin

  authored
  b1958d8

• Remove no longer needed meta.id formatting

  Show description for 01d5dd4
  

  tkchafin

  and

  muffato

  authored
  01d5dd4

• fix id -> meta.id

  tkchafin

  authored
  3886d04

• simplify join operations

  tkchafin

  authored
  0e1500a

• remove redundant publishDir in SAMTOOLS_DICT

  tkchafin

  authored
  cbd4c27

• fix failed test after simplifying joined

  tkchafin

  authored
  b591723

Commits on Jul 3, 2024

• implement new AN: field resolution

  tkchafin

  authored
  5258712