Merge pull request #86 from sanger-tol/maxRetries

Update maxRetries
sanger-tol · Oct 19, 2023 · 3a60381 · 3a60381
2 parents 33a8b4e + ebf0747
commit 3a60381
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/conf/base.config b/conf/base.config
@@ -15,7 +15,7 @@ process {
     time   = { check_max( 4.h  * task.attempt, 'time'   ) }
 
     errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
-    maxRetries    = 1
+    maxRetries    = 5
     maxErrors     = '-1'
 
     // Process-specific resource requirements
@@ -50,6 +50,11 @@ process {
     withLabel:process_high_memory {
         memory = { check_max( 200.GB * task.attempt, 'memory' ) }
     }
+    withName:"COOLER_.*" {
+        cpus   = { check_max( 6     * task.attempt, 'cpus'    ) }
+        memory = { check_max( 36.GB * task.attempt, 'memory'  ) }
+        time   = { check_max( 8.h   * task.attempt, 'time'    ) }
+    }
     withLabel:error_ignore {
         errorStrategy = 'ignore'
     }